Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CX3CR1P49238 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CX3CR1P49238 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
CX3CR1P49238 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CX3CR1P49238 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CX3CR1P49238 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CX3CR1P49238 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CX3CR1P49238 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CX3CR1P49238 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.52□□□□□ -0.08
CX3CR1P49238 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.52□□□□□ -0.08
CX3CR1P49238 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.52□□□□□ -0.08
CX3CR1P49238 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.52□□□□□ -0.08
CX3CR1P49238 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.52□□□□□ -0.08
CX3CR1P49238 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
CX3CR1P49238 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.08
CX3CR1P49238 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CX3CR1P49238 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC14.52□□□□□ -0.09
CX3CR1P49238 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
CX3CR1P49238 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
CX3CR1P49238 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
CX3CR1P49238 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 AC092910.1-201ENST00000482027 1129 ntBASIC14.52□□□□□ -0.09
CX3CR1P49238 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC14.52□□□□□ -0.09
CX3CR1P49238 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.52□□□□□ -0.09
CX3CR1P49238 RN7SL510P-201ENST00000581311 263 ntBASIC14.52□□□□□ -0.09
CX3CR1P49238 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.52□□□□□ -0.09
CX3CR1P49238 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.52□□□□□ -0.09
CX3CR1P49238 AL691432.3-201ENST00000621860 400 ntBASIC14.52□□□□□ -0.09
CX3CR1P49238 AC117500.6-201ENST00000624871 588 ntBASIC14.52□□□□□ -0.09
CX3CR1P49238 FAM215A-202ENST00000632077 792 ntBASIC14.52□□□□□ -0.09
CX3CR1P49238 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.52□□□□□ -0.09
CX3CR1P49238 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
CX3CR1P49238 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.52□□□□□ -0.09
CX3CR1P49238 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CX3CR1P49238 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.51□□□□□ -0.09
CX3CR1P49238 AC012569.1-201ENST00000591191 1524 ntBASIC14.51□□□□□ -0.09
CX3CR1P49238 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
CX3CR1P49238 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.51□□□□□ -0.09
CX3CR1P49238 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.51□□□□□ -0.09
CX3CR1P49238 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.51□□□□□ -0.09
CX3CR1P49238 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC14.51□□□□□ -0.09
CX3CR1P49238 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14.51□□□□□ -0.09
CX3CR1P49238 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.51□□□□□ -0.09
CX3CR1P49238 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC14.51□□□□□ -0.09
CX3CR1P49238 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.51□□□□□ -0.09
CX3CR1P49238 MIR4751-201ENST00000578027 74 ntBASIC14.51□□□□□ -0.09
CX3CR1P49238 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CX3CR1P49238 AC010654.1-201ENST00000615722 808 ntBASIC14.51□□□□□ -0.09
CX3CR1P49238 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.51□□□□□ -0.09
CX3CR1P49238 AL031008.1-201ENST00000619963 541 ntBASIC14.51□□□□□ -0.09
CX3CR1P49238 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.51□□□□□ -0.09
CX3CR1P49238 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CX3CR1P49238 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.51□□□□□ -0.09
CX3CR1P49238 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
CX3CR1P49238 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CX3CR1P49238 AC105917.1-201ENST00000506637 2539 ntBASIC14.51□□□□□ -0.09
CX3CR1P49238 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms