Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRCA1P38398 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC19.59■□□□□ 0.73
BRCA1P38398 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC19.59■□□□□ 0.73
BRCA1P38398 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRCA1P38398 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BRCA1P38398 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRCA1P38398 USP40-206ENST00000443711 628 ntTSL 2 BASIC19.59■□□□□ 0.73
BRCA1P38398 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRCA1P38398 IMP3P2-201ENST00000489760 475 ntBASIC19.59■□□□□ 0.73
BRCA1P38398 FADS2-212ENST00000522639 360 ntTSL 5 BASIC19.59■□□□□ 0.73
BRCA1P38398 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC19.59■□□□□ 0.73
BRCA1P38398 FADS2-215ENST00000574708 385 ntTSL 3 BASIC19.59■□□□□ 0.73
BRCA1P38398 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC19.59■□□□□ 0.73
BRCA1P38398 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC19.59■□□□□ 0.73
BRCA1P38398 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC19.59■□□□□ 0.73
BRCA1P38398 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
BRCA1P38398 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC19.59■□□□□ 0.73
BRCA1P38398 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BRCA1P38398 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.59■□□□□ 0.73
BRCA1P38398 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
BRCA1P38398 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRCA1P38398 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
BRCA1P38398 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.59■□□□□ 0.73
BRCA1P38398 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.59■□□□□ 0.73
BRCA1P38398 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRCA1P38398 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BRCA1P38398 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRCA1P38398 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
BRCA1P38398 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.58■□□□□ 0.73
BRCA1P38398 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
BRCA1P38398 MIR1202-201ENST00000408529 83 ntBASIC19.58■□□□□ 0.73
BRCA1P38398 DEF8-202ENST00000418391 852 ntTSL 2 BASIC19.58■□□□□ 0.73
BRCA1P38398 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC19.58■□□□□ 0.73
BRCA1P38398 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
BRCA1P38398 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.58■□□□□ 0.73
BRCA1P38398 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC19.58■□□□□ 0.73
BRCA1P38398 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.73
BRCA1P38398 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC19.58■□□□□ 0.73
BRCA1P38398 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
BRCA1P38398 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.58■□□□□ 0.73
BRCA1P38398 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BRCA1P38398 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BRCA1P38398 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BRCA1P38398 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BRCA1P38398 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
BRCA1P38398 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
BRCA1P38398 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
BRCA1P38398 SDCCAG3P2-201ENST00000326105 1023 ntBASIC19.58■□□□□ 0.72
BRCA1P38398 PTPA-217ENST00000434095 870 ntTSL 2 BASIC19.58■□□□□ 0.72
BRCA1P38398 C2orf27AP3-201ENST00000434123 579 ntBASIC19.58■□□□□ 0.72
BRCA1P38398 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC19.58■□□□□ 0.72
BRCA1P38398 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19.58■□□□□ 0.72
BRCA1P38398 AC009486.1-201ENST00000569860 813 ntBASIC19.58■□□□□ 0.72
BRCA1P38398 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC19.58■□□□□ 0.72
BRCA1P38398 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC19.58■□□□□ 0.72
BRCA1P38398 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC19.58■□□□□ 0.72
BRCA1P38398 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC19.58■□□□□ 0.72
BRCA1P38398 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC19.58■□□□□ 0.72
BRCA1P38398 AL354718.3-201ENST00000616414 581 ntBASIC19.58■□□□□ 0.72
BRCA1P38398 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC19.58■□□□□ 0.72
BRCA1P38398 CR382287.1-201ENST00000623954 586 ntBASIC19.58■□□□□ 0.72
BRCA1P38398 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
BRCA1P38398 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.58■□□□□ 0.72
BRCA1P38398 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
BRCA1P38398 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BRCA1P38398 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC19.57■□□□□ 0.72
BRCA1P38398 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
BRCA1P38398 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BRCA1P38398 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
BRCA1P38398 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC19.57■□□□□ 0.72
BRCA1P38398 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BRCA1P38398 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
BRCA1P38398 AHCYP2-201ENST00000430630 1300 ntBASIC19.57■□□□□ 0.72
BRCA1P38398 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC19.57■□□□□ 0.72
BRCA1P38398 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
BRCA1P38398 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
BRCA1P38398 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
BRCA1P38398 AP002490.2-201ENST00000524791 560 ntBASIC19.57■□□□□ 0.72
BRCA1P38398 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC19.57■□□□□ 0.72
BRCA1P38398 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC19.57■□□□□ 0.72
BRCA1P38398 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
BRCA1P38398 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
BRCA1P38398 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC19.57■□□□□ 0.72
BRCA1P38398 AL645728.1-201ENST00000366221 2101 ntBASIC19.57■□□□□ 0.72
BRCA1P38398 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BRCA1P38398 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BRCA1P38398 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC19.57■□□□□ 0.72
BRCA1P38398 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.57■□□□□ 0.72
BRCA1P38398 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BRCA1P38398 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
BRCA1P38398 AC091046.1-201ENST00000331871 207 ntBASIC19.56■□□□□ 0.72
BRCA1P38398 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
BRCA1P38398 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC19.56■□□□□ 0.72
BRCA1P38398 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC19.56■□□□□ 0.72
BRCA1P38398 ACR-203ENST00000529621 708 ntTSL 5 BASIC19.56■□□□□ 0.72
BRCA1P38398 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC19.56■□□□□ 0.72
BRCA1P38398 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC19.56■□□□□ 0.72
BRCA1P38398 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC19.56■□□□□ 0.72
BRCA1P38398 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms