Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA3P32297 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA3P32297 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA3P32297 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA3P32297 AC011270.2-201ENST00000624293 2550 ntBASIC17.41■□□□□ 0.38
CHRNA3P32297 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.41■□□□□ 0.38
CHRNA3P32297 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CHRNA3P32297 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA3P32297 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA3P32297 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA3P32297 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA3P32297 PI4KAP1-204ENST00000612579 1703 ntBASIC17.41■□□□□ 0.38
CHRNA3P32297 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.41■□□□□ 0.38
CHRNA3P32297 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CHRNA3P32297 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA3P32297 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.4■□□□□ 0.38
CHRNA3P32297 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.4■□□□□ 0.38
CHRNA3P32297 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CHRNA3P32297 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 AL596257.1-201ENST00000641463 2694 ntBASIC17.4■□□□□ 0.38
CHRNA3P32297 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CHRNA3P32297 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.4■□□□□ 0.38
CHRNA3P32297 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.4■□□□□ 0.38
CHRNA3P32297 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 MRPL20P1-201ENST00000400819 433 ntBASIC17.4■□□□□ 0.38
CHRNA3P32297 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.4■□□□□ 0.38
CHRNA3P32297 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.4■□□□□ 0.38
CHRNA3P32297 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
CHRNA3P32297 AC092865.5-201ENST00000545435 363 ntBASIC17.4■□□□□ 0.38
CHRNA3P32297 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.4■□□□□ 0.38
CHRNA3P32297 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.4■□□□□ 0.38
CHRNA3P32297 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.4■□□□□ 0.38
CHRNA3P32297 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.4■□□□□ 0.38
CHRNA3P32297 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CHRNA3P32297 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
CHRNA3P32297 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 AL512652.2-201ENST00000625156 1716 ntBASIC17.4■□□□□ 0.38
CHRNA3P32297 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.4■□□□□ 0.38
CHRNA3P32297 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.4■□□□□ 0.38
CHRNA3P32297 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CHRNA3P32297 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.4■□□□□ 0.38
CHRNA3P32297 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CHRNA3P32297 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 AC006449.6-201ENST00000612330 2296 ntBASIC17.4■□□□□ 0.38
CHRNA3P32297 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.4■□□□□ 0.38
CHRNA3P32297 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.4■□□□□ 0.38
CHRNA3P32297 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.4■□□□□ 0.38
CHRNA3P32297 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA3P32297 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.38
CHRNA3P32297 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CHRNA3P32297 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.39■□□□□ 0.38
CHRNA3P32297 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CHRNA3P32297 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
CHRNA3P32297 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.39■□□□□ 0.38
CHRNA3P32297 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
CHRNA3P32297 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CHRNA3P32297 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CHRNA3P32297 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
CHRNA3P32297 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHRNA3P32297 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.39■□□□□ 0.37
CHRNA3P32297 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CHRNA3P32297 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHRNA3P32297 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHRNA3P32297 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CHRNA3P32297 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.39■□□□□ 0.37
CHRNA3P32297 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHRNA3P32297 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHRNA3P32297 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHRNA3P32297 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.39■□□□□ 0.37
CHRNA3P32297 KRT18P13-201ENST00000400056 1290 ntBASIC17.39■□□□□ 0.37
CHRNA3P32297 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CHRNA3P32297 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.39■□□□□ 0.37
CHRNA3P32297 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.39■□□□□ 0.37
CHRNA3P32297 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHRNA3P32297 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHRNA3P32297 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.39■□□□□ 0.37
CHRNA3P32297 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.39■□□□□ 0.37
CHRNA3P32297 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
CHRNA3P32297 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CHRNA3P32297 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms