Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RXRBP28702 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC21.14■□□□□ 0.97
RXRBP28702 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC21.14■□□□□ 0.97
RXRBP28702 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC21.14■□□□□ 0.97
RXRBP28702 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC21.14■□□□□ 0.97
RXRBP28702 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RXRBP28702 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RXRBP28702 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RXRBP28702 AC141586.1-203ENST00000567242 366 ntBASIC21.14■□□□□ 0.97
RXRBP28702 KSR1-207ENST00000578981 748 ntTSL 4 BASIC21.14■□□□□ 0.97
RXRBP28702 AC007663.3-201ENST00000609632 465 ntBASIC21.14■□□□□ 0.97
RXRBP28702 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC21.14■□□□□ 0.97
RXRBP28702 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC21.14■□□□□ 0.97
RXRBP28702 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 AGER-206ENST00000375070 1463 ntTSL 5 BASIC21.13■□□□□ 0.97
RXRBP28702 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RXRBP28702 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 AC093525.9-201ENST00000624961 1746 ntBASIC21.13■□□□□ 0.97
RXRBP28702 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC21.13■□□□□ 0.97
RXRBP28702 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC21.13■□□□□ 0.97
RXRBP28702 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC21.13■□□□□ 0.97
RXRBP28702 AC024681.1-201ENST00000521917 487 ntBASIC21.13■□□□□ 0.97
RXRBP28702 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC21.13■□□□□ 0.97
RXRBP28702 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
RXRBP28702 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC21.13■□□□□ 0.97
RXRBP28702 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC21.13■□□□□ 0.97
RXRBP28702 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC21.13■□□□□ 0.97
RXRBP28702 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
RXRBP28702 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RXRBP28702 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 AC008132.1-202ENST00000342005 1389 ntBASIC21.12■□□□□ 0.97
RXRBP28702 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RXRBP28702 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 AC006277.1-201ENST00000624348 1610 ntBASIC21.12■□□□□ 0.97
RXRBP28702 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC21.12■□□□□ 0.97
RXRBP28702 SERPINA13P-202ENST00000478994 924 ntBASIC21.12■□□□□ 0.97
RXRBP28702 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC21.12■□□□□ 0.97
RXRBP28702 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC21.12■□□□□ 0.97
RXRBP28702 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC21.12■□□□□ 0.97
RXRBP28702 AC006453.4-201ENST00000636949 1252 ntBASIC21.12■□□□□ 0.97
RXRBP28702 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
RXRBP28702 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
RXRBP28702 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 CYP51A1P3-201ENST00000400072 1428 ntBASIC21.12■□□□□ 0.97
RXRBP28702 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RXRBP28702 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RXRBP28702 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC21.11■□□□□ 0.97
RXRBP28702 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RXRBP28702 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC21.11■□□□□ 0.97
RXRBP28702 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RXRBP28702 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RXRBP28702 PARVG-202ENST00000415224 999 ntTSL 2 BASIC21.11■□□□□ 0.97
RXRBP28702 TOMM22P5-201ENST00000416399 439 ntBASIC21.11■□□□□ 0.97
RXRBP28702 AC234782.1-201ENST00000451950 919 ntBASIC21.11■□□□□ 0.97
RXRBP28702 RN7SL8P-201ENST00000461771 266 ntBASIC21.11■□□□□ 0.97
RXRBP28702 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
RXRBP28702 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC21.11■□□□□ 0.97
RXRBP28702 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RXRBP28702 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RXRBP28702 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RXRBP28702 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC21.11■□□□□ 0.97
RXRBP28702 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC21.11■□□□□ 0.97
RXRBP28702 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RXRBP28702 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RXRBP28702 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
RXRBP28702 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RXRBP28702 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC21.11■□□□□ 0.97
RXRBP28702 FOS-202ENST00000535987 1402 ntTSL 2 BASIC21.11■□□□□ 0.97
RXRBP28702 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RXRBP28702 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
RXRBP28702 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RXRBP28702 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC21.1■□□□□ 0.97
RXRBP28702 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RXRBP28702 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RXRBP28702 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RXRBP28702 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
RXRBP28702 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RXRBP28702 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms