Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A3P12111 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
COL6A3P12111 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A3P12111 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
COL6A3P12111 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A3P12111 ACTBP7-201ENST00000418351 1124 ntBASIC16.79■□□□□ 0.28
COL6A3P12111 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A3P12111 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.79■□□□□ 0.28
COL6A3P12111 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.79■□□□□ 0.28
COL6A3P12111 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A3P12111 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A3P12111 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A3P12111 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A3P12111 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A3P12111 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
COL6A3P12111 AC007274.2-201ENST00000421675 662 ntBASIC16.79■□□□□ 0.28
COL6A3P12111 AC134915.1-201ENST00000426461 574 ntBASIC16.79■□□□□ 0.28
COL6A3P12111 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC16.79■□□□□ 0.28
COL6A3P12111 RPL13P2-201ENST00000440687 659 ntBASIC16.79■□□□□ 0.28
COL6A3P12111 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A3P12111 AC025279.2-201ENST00000569730 653 ntBASIC16.79■□□□□ 0.28
COL6A3P12111 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.78■□□□□ 0.28
COL6A3P12111 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A3P12111 AC073130.3-201ENST00000624389 2278 ntBASIC16.78■□□□□ 0.28
COL6A3P12111 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.78■□□□□ 0.28
COL6A3P12111 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.78■□□□□ 0.28
COL6A3P12111 AC233280.19-201ENST00000633223 136 ntBASIC16.78■□□□□ 0.28
COL6A3P12111 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
COL6A3P12111 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A3P12111 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.78■□□□□ 0.28
COL6A3P12111 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.78■□□□□ 0.28
COL6A3P12111 IGHV3-37-201ENST00000518544 340 ntBASIC16.78■□□□□ 0.28
COL6A3P12111 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
COL6A3P12111 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A3P12111 AC120045.2-201ENST00000567334 178 ntBASIC16.78■□□□□ 0.28
COL6A3P12111 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
COL6A3P12111 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.78■□□□□ 0.28
COL6A3P12111 BX539320.1-201ENST00000623759 877 ntBASIC16.78■□□□□ 0.28
COL6A3P12111 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.78■□□□□ 0.28
COL6A3P12111 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.78■□□□□ 0.28
COL6A3P12111 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 AC135050.7-201ENST00000624508 2218 ntBASIC16.78■□□□□ 0.28
COL6A3P12111 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A3P12111 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A3P12111 AL133267.1-201ENST00000398220 340 ntBASIC16.77■□□□□ 0.28
COL6A3P12111 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A3P12111 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A3P12111 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC16.77■□□□□ 0.28
COL6A3P12111 RPL13AP25-201ENST00000484130 612 ntBASIC16.77■□□□□ 0.28
COL6A3P12111 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC16.77■□□□□ 0.28
COL6A3P12111 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
COL6A3P12111 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
COL6A3P12111 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A3P12111 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A3P12111 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A3P12111 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.77■□□□□ 0.28
COL6A3P12111 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A3P12111 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A3P12111 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A3P12111 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A3P12111 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
COL6A3P12111 C1QBPP1-201ENST00000400117 770 ntBASIC16.77■□□□□ 0.28
COL6A3P12111 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.77■□□□□ 0.28
COL6A3P12111 AL805961.1-201ENST00000642026 753 ntBASIC16.77■□□□□ 0.28
COL6A3P12111 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC16.77■□□□□ 0.27
COL6A3P12111 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A3P12111 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
COL6A3P12111 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC16.77■□□□□ 0.27
COL6A3P12111 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A3P12111 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.77■□□□□ 0.27
COL6A3P12111 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A3P12111 AGPAT5P1-201ENST00000455855 1019 ntBASIC16.77■□□□□ 0.27
COL6A3P12111 AC022137.2-201ENST00000503482 481 ntBASIC16.77■□□□□ 0.27
COL6A3P12111 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.77■□□□□ 0.27
COL6A3P12111 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.77■□□□□ 0.27
COL6A3P12111 MME-218ENST00000625667 363 ntTSL 5 BASIC16.77■□□□□ 0.27
COL6A3P12111 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A3P12111 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
COL6A3P12111 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A3P12111 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A3P12111 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A3P12111 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A3P12111 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms