Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 RNF126P1-202ENST00000569893 925 ntBASIC12.11□□□□□ -0.47
SMKR1H3BMG3 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 C1R-202ENST00000536053 2347 ntTSL 2 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 KRT8P49-201ENST00000604166 1432 ntBASIC12.11□□□□□ -0.47
SMKR1H3BMG3 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 AC023157.3-201ENST00000619086 2088 ntBASIC12.1□□□□□ -0.47
SMKR1H3BMG3 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 HNRNPRP1-201ENST00000453465 1695 ntBASIC12.1□□□□□ -0.47
SMKR1H3BMG3 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 ANKRD20A18P-201ENST00000359341 492 ntBASIC12.1□□□□□ -0.47
SMKR1H3BMG3 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 GXYLT1P3-201ENST00000453058 1193 ntBASIC12.1□□□□□ -0.47
SMKR1H3BMG3 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 AL138831.2-201ENST00000606564 490 ntBASIC12.1□□□□□ -0.47
SMKR1H3BMG3 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 AL138966.2-201ENST00000621997 464 ntBASIC12.1□□□□□ -0.47
SMKR1H3BMG3 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 GSN-203ENST00000373808 2664 ntTSL 2 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
SMKR1H3BMG3 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC12.09□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms