Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 NARF-206ENST00000457415 1668 ntTSL 5 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 ADH5P3-201ENST00000433842 1137 ntBASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 CITED2-204ENST00000618718 901 ntTSL 2 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 AC073439.1-201ENST00000624121 1774 ntBASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 MTHFR-217ENST00000641820 1569 ntBASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC21.12■□□□□ 0.97
SMC4Q9NTJ3 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 AC006449.6-201ENST00000612330 2296 ntBASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 COX10-202ENST00000429152 875 ntTSL 2 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 AL671277.1-201ENST00000429656 993 ntBASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 HTR5BP-201ENST00000430851 1154 ntBASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 AC093724.1-201ENST00000448659 1027 ntBASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 AL135744.1-201ENST00000565098 629 ntBASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 ACE-204ENST00000428043 5120 ntTSL 2 BASIC21.11■□□□□ 0.97
SMC4Q9NTJ3 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 AC018695.7-201ENST00000624587 2492 ntBASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms