Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 PMP22-202ENST00000395936 816 ntTSL 3 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 AC093724.1-201ENST00000448659 1027 ntBASIC12.75□□□□□ -0.37
CCDC140Q96MF4 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 QPRT-203ENST00000562473 579 ntTSL 3 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 RARRES2P8-201ENST00000566335 367 ntBASIC12.75□□□□□ -0.37
CCDC140Q96MF4 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 AC026691.1-201ENST00000602502 2017 ntBASIC12.75□□□□□ -0.37
CCDC140Q96MF4 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CCDC140Q96MF4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC12.74□□□□□ -0.37
CCDC140Q96MF4 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 AL596087.1-201ENST00000400979 1969 ntBASIC12.74□□□□□ -0.37
CCDC140Q96MF4 AC073439.1-201ENST00000624121 1774 ntBASIC12.74□□□□□ -0.37
CCDC140Q96MF4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 NEK7-201ENST00000367383 586 ntTSL 2 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 AL355306.1-201ENST00000415580 579 ntBASIC12.74□□□□□ -0.37
CCDC140Q96MF4 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 AC092902.6-201ENST00000641783 218 ntBASIC12.74□□□□□ -0.37
CCDC140Q96MF4 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCDC140Q96MF4 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms