Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB4Q8WW32 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGB4Q8WW32 AC139713.2-201ENST00000641328 2723 ntBASIC16.47■□□□□ 0.23
HMGB4Q8WW32 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 AL391256.1-201ENST00000443260 1855 ntBASIC16.46■□□□□ 0.23
HMGB4Q8WW32 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 SPDYE19P-201ENST00000338590 713 ntBASIC16.46■□□□□ 0.23
HMGB4Q8WW32 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 DFFBP1-201ENST00000433250 979 ntBASIC16.46■□□□□ 0.23
HMGB4Q8WW32 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 BTBD7P1-201ENST00000447253 1453 ntBASIC16.46■□□□□ 0.23
HMGB4Q8WW32 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB4Q8WW32 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
HMGB4Q8WW32 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
HMGB4Q8WW32 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB4Q8WW32 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms