Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
DEPDC4Q8N2C3 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 AC125634.1-201ENST00000438758 1403 ntBASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 AC003669.1-201ENST00000334569 611 ntBASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 RCN1P2-201ENST00000398357 915 ntBASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 AC132008.2-207ENST00000454517 770 ntBASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 AC005336.2-201ENST00000593183 939 ntBASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 AL138831.2-201ENST00000606564 490 ntBASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 AL031008.1-201ENST00000619963 541 ntBASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 AC092384.3-202ENST00000564646 2873 ntBASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 AL596087.1-201ENST00000400979 1969 ntBASIC15.44■□□□□ 0.06
DEPDC4Q8N2C3 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 SCARNA2-201ENST00000458748 420 ntBASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 GZMM-202ENST00000592501 941 ntTSL 3 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
DEPDC4Q8N2C3 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
DEPDC4Q8N2C3 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
DEPDC4Q8N2C3 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
DEPDC4Q8N2C3 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.42■□□□□ 0.06
DEPDC4Q8N2C3 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
DEPDC4Q8N2C3 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
DEPDC4Q8N2C3 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
DEPDC4Q8N2C3 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
DEPDC4Q8N2C3 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
DEPDC4Q8N2C3 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
DEPDC4Q8N2C3 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.42■□□□□ 0.06
DEPDC4Q8N2C3 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms