Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
USP54Q70EL1 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP54Q70EL1 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP54Q70EL1 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC21.51■■□□□ 1.03
USP54Q70EL1 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
USP54Q70EL1 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP54Q70EL1 AC005229.1-201ENST00000392885 409 ntBASIC21.51■■□□□ 1.03
USP54Q70EL1 USP40-206ENST00000443711 628 ntTSL 2 BASIC21.51■■□□□ 1.03
USP54Q70EL1 FAM86LP-201ENST00000478302 853 ntBASIC21.51■■□□□ 1.03
USP54Q70EL1 MFF-223ENST00000524634 647 ntTSL 2 BASIC21.51■■□□□ 1.03
USP54Q70EL1 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC21.51■■□□□ 1.03
USP54Q70EL1 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC21.51■■□□□ 1.03
USP54Q70EL1 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC21.51■■□□□ 1.03
USP54Q70EL1 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
USP54Q70EL1 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP54Q70EL1 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
USP54Q70EL1 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
USP54Q70EL1 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
USP54Q70EL1 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
USP54Q70EL1 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP54Q70EL1 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP54Q70EL1 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP54Q70EL1 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
USP54Q70EL1 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP54Q70EL1 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC21.51■■□□□ 1.03
USP54Q70EL1 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP54Q70EL1 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP54Q70EL1 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC21.5■■□□□ 1.03
USP54Q70EL1 BNIP3P42-201ENST00000454982 569 ntBASIC21.5■■□□□ 1.03
USP54Q70EL1 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
USP54Q70EL1 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
USP54Q70EL1 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC21.5■■□□□ 1.03
USP54Q70EL1 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC21.5■■□□□ 1.03
USP54Q70EL1 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC21.5■■□□□ 1.03
USP54Q70EL1 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC21.5■■□□□ 1.03
USP54Q70EL1 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC21.5■■□□□ 1.03
USP54Q70EL1 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC21.5■■□□□ 1.03
USP54Q70EL1 BNIP3P29-201ENST00000598302 571 ntBASIC21.5■■□□□ 1.03
USP54Q70EL1 AC011447.5-201ENST00000616168 564 ntBASIC21.5■■□□□ 1.03
USP54Q70EL1 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP54Q70EL1 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP54Q70EL1 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
USP54Q70EL1 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC21.5■■□□□ 1.03
USP54Q70EL1 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP54Q70EL1 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
USP54Q70EL1 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP54Q70EL1 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
USP54Q70EL1 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP54Q70EL1 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP54Q70EL1 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
USP54Q70EL1 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC21.5■■□□□ 1.03
USP54Q70EL1 KRT18P43-201ENST00000469825 1281 ntBASIC21.5■■□□□ 1.03
USP54Q70EL1 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC21.5■■□□□ 1.03
USP54Q70EL1 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
USP54Q70EL1 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC21.5■■□□□ 1.03
USP54Q70EL1 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC21.5■■□□□ 1.03
USP54Q70EL1 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP54Q70EL1 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.49■■□□□ 1.03
USP54Q70EL1 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC21.49■■□□□ 1.03
USP54Q70EL1 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC21.49■■□□□ 1.03
USP54Q70EL1 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC21.49■■□□□ 1.03
USP54Q70EL1 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC21.49■■□□□ 1.03
USP54Q70EL1 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
USP54Q70EL1 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
USP54Q70EL1 ME2P1-201ENST00000426028 1970 ntBASIC21.49■■□□□ 1.03
USP54Q70EL1 AMT-233ENST00000636522 1620 ntTSL 2 BASIC21.49■■□□□ 1.03
USP54Q70EL1 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
USP54Q70EL1 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
USP54Q70EL1 ELP6-209ENST00000446787 894 ntTSL 3 BASIC21.49■■□□□ 1.03
USP54Q70EL1 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC21.49■■□□□ 1.03
USP54Q70EL1 AC104989.1-201ENST00000519711 778 ntBASIC21.49■■□□□ 1.03
USP54Q70EL1 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC21.49■■□□□ 1.03
USP54Q70EL1 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC21.49■■□□□ 1.03
USP54Q70EL1 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
USP54Q70EL1 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
USP54Q70EL1 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC21.49■■□□□ 1.03
USP54Q70EL1 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
USP54Q70EL1 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
USP54Q70EL1 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP54Q70EL1 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP54Q70EL1 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
USP54Q70EL1 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP54Q70EL1 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP54Q70EL1 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP54Q70EL1 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
USP54Q70EL1 SOCS2P1-201ENST00000417727 557 ntBASIC21.48■■□□□ 1.03
USP54Q70EL1 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC21.48■■□□□ 1.03
USP54Q70EL1 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC21.48■■□□□ 1.03
USP54Q70EL1 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC21.48■■□□□ 1.03
USP54Q70EL1 VILL-207ENST00000465644 1857 ntTSL 5 BASIC21.48■■□□□ 1.03
USP54Q70EL1 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC21.48■■□□□ 1.03
USP54Q70EL1 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
USP54Q70EL1 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
USP54Q70EL1 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
USP54Q70EL1 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
USP54Q70EL1 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC21.48■■□□□ 1.03
USP54Q70EL1 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC21.48■■□□□ 1.03
USP54Q70EL1 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC21.48■■□□□ 1.03
USP54Q70EL1 RPS24-214ENST00000613865 538 ntTSL 5 BASIC21.48■■□□□ 1.03
USP54Q70EL1 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms