Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 AC140658.5-201ENST00000438532 169 ntBASIC19.71■□□□□ 0.75
RNF20Q5VTR2 AL591424.1-201ENST00000442569 1213 ntBASIC19.71■□□□□ 0.75
RNF20Q5VTR2 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 KRT19P2-202ENST00000557173 1012 ntBASIC19.71■□□□□ 0.75
RNF20Q5VTR2 AC018845.2-201ENST00000568326 409 ntBASIC19.71■□□□□ 0.75
RNF20Q5VTR2 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 AC120114.3-201ENST00000611923 658 ntBASIC19.71■□□□□ 0.75
RNF20Q5VTR2 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF20Q5VTR2 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 AC026396.1-201ENST00000419388 421 ntBASIC19.7■□□□□ 0.74
RNF20Q5VTR2 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 KRT18P2-201ENST00000447938 1258 ntBASIC19.7■□□□□ 0.74
RNF20Q5VTR2 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 AL596087.1-201ENST00000400979 1969 ntBASIC19.7■□□□□ 0.74
RNF20Q5VTR2 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF20Q5VTR2 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF20Q5VTR2 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms