Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 TMEM198B-204ENST00000484016 896 ntBASIC17.13■□□□□ 0.33
CHD9Q3L8U1 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 MIR3619-201ENST00000579667 83 ntBASIC17.13■□□□□ 0.33
CHD9Q3L8U1 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 FAM86LP-201ENST00000478302 853 ntBASIC17.13■□□□□ 0.33
CHD9Q3L8U1 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHD9Q3L8U1 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 ABBA01031663.1-201ENST00000635630 790 ntBASIC17.12■□□□□ 0.33
CHD9Q3L8U1 AC138627.1-207ENST00000641560 1006 ntBASIC17.12■□□□□ 0.33
CHD9Q3L8U1 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 RN7SL769P-201ENST00000469386 295 ntBASIC17.12■□□□□ 0.33
CHD9Q3L8U1 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 AC106760.1-201ENST00000508690 800 ntBASIC17.12■□□□□ 0.33
CHD9Q3L8U1 AL359711.2-201ENST00000563105 872 ntBASIC17.12■□□□□ 0.33
CHD9Q3L8U1 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CHD9Q3L8U1 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 MIR326-201ENST00000362220 95 ntBASIC17.11■□□□□ 0.33
CHD9Q3L8U1 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 AL603756.1-201ENST00000606511 2163 ntBASIC17.11■□□□□ 0.33
CHD9Q3L8U1 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 AC091046.1-201ENST00000331871 207 ntBASIC17.11■□□□□ 0.33
CHD9Q3L8U1 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 AC128714.1-201ENST00000637035 887 ntBASIC17.11■□□□□ 0.33
CHD9Q3L8U1 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 AL138688.1-201ENST00000624851 1594 ntBASIC17.11■□□□□ 0.33
CHD9Q3L8U1 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 NUS1P3-201ENST00000423502 862 ntBASIC17.11■□□□□ 0.33
CHD9Q3L8U1 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 AC120045.2-201ENST00000567334 178 ntBASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms