Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.2■□□□□ 0.82
NUP98P52948 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
NUP98P52948 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
NUP98P52948 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
NUP98P52948 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
NUP98P52948 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NUP98P52948 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
NUP98P52948 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC20.19■□□□□ 0.82
NUP98P52948 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NUP98P52948 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
NUP98P52948 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NUP98P52948 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NUP98P52948 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NUP98P52948 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC20.19■□□□□ 0.82
NUP98P52948 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC20.19■□□□□ 0.82
NUP98P52948 AC011495.1-201ENST00000498085 584 ntBASIC20.19■□□□□ 0.82
NUP98P52948 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC20.19■□□□□ 0.82
NUP98P52948 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.19■□□□□ 0.82
NUP98P52948 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC20.19■□□□□ 0.82
NUP98P52948 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC20.19■□□□□ 0.82
NUP98P52948 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC20.19■□□□□ 0.82
NUP98P52948 WNT11-204ENST00000621122 789 ntTSL 5 BASIC20.19■□□□□ 0.82
NUP98P52948 AL033527.4-201ENST00000641026 673 ntBASIC20.19■□□□□ 0.82
NUP98P52948 AC009053.2-201ENST00000563701 2365 ntBASIC20.19■□□□□ 0.82
NUP98P52948 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC20.19■□□□□ 0.82
NUP98P52948 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.19■□□□□ 0.82
NUP98P52948 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NUP98P52948 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC20.19■□□□□ 0.82
NUP98P52948 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NUP98P52948 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
NUP98P52948 REXO1L8P-201ENST00000604378 1897 ntBASIC20.19■□□□□ 0.82
NUP98P52948 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
NUP98P52948 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.18■□□□□ 0.82
NUP98P52948 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC20.18■□□□□ 0.82
NUP98P52948 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUP98P52948 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NUP98P52948 AC234783.1-201ENST00000441761 496 ntBASIC20.18■□□□□ 0.82
NUP98P52948 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC20.18■□□□□ 0.82
NUP98P52948 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC20.18■□□□□ 0.82
NUP98P52948 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
NUP98P52948 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC20.18■□□□□ 0.82
NUP98P52948 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC20.18■□□□□ 0.82
NUP98P52948 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUP98P52948 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUP98P52948 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUP98P52948 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC20.18■□□□□ 0.82
NUP98P52948 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.18■□□□□ 0.82
NUP98P52948 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUP98P52948 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
NUP98P52948 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.18■□□□□ 0.82
NUP98P52948 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NUP98P52948 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NUP98P52948 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.18■□□□□ 0.82
NUP98P52948 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUP98P52948 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
NUP98P52948 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.18■□□□□ 0.82
NUP98P52948 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC20.18■□□□□ 0.82
NUP98P52948 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NUP98P52948 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC20.18■□□□□ 0.82
NUP98P52948 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
NUP98P52948 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
NUP98P52948 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
NUP98P52948 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC20.18■□□□□ 0.82
NUP98P52948 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC20.18■□□□□ 0.82
NUP98P52948 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
NUP98P52948 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC20.18■□□□□ 0.82
NUP98P52948 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUP98P52948 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUP98P52948 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC20.17■□□□□ 0.82
NUP98P52948 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC20.17■□□□□ 0.82
NUP98P52948 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUP98P52948 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUP98P52948 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
NUP98P52948 MIR658-201ENST00000385210 100 ntBASIC20.17■□□□□ 0.82
NUP98P52948 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NUP98P52948 MEP1AP4-201ENST00000423244 1087 ntBASIC20.17■□□□□ 0.82
NUP98P52948 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC20.17■□□□□ 0.82
NUP98P52948 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC20.17■□□□□ 0.82
NUP98P52948 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC20.17■□□□□ 0.82
NUP98P52948 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC20.17■□□□□ 0.82
NUP98P52948 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUP98P52948 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.17■□□□□ 0.82
NUP98P52948 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC20.17■□□□□ 0.82
NUP98P52948 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUP98P52948 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUP98P52948 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUP98P52948 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUP98P52948 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC20.16■□□□□ 0.82
NUP98P52948 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NUP98P52948 CDC14C-201ENST00000428251 1719 ntBASIC20.16■□□□□ 0.82
NUP98P52948 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.16■□□□□ 0.82
NUP98P52948 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NUP98P52948 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.16■□□□□ 0.82
NUP98P52948 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
NUP98P52948 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NUP98P52948 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NUP98P52948 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC20.16■□□□□ 0.82
NUP98P52948 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NUP98P52948 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NUP98P52948 KRT18P64-201ENST00000434946 1219 ntBASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms