Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
TOP3BO95985 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TOP3BO95985 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.95■□□□□ 0.3
TOP3BO95985 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.95■□□□□ 0.3
TOP3BO95985 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.95■□□□□ 0.3
TOP3BO95985 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
TOP3BO95985 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.95■□□□□ 0.3
TOP3BO95985 SPDYE21P-201ENST00000413323 827 ntBASIC16.95■□□□□ 0.3
TOP3BO95985 HLA-V-201ENST00000429037 534 ntBASIC16.95■□□□□ 0.3
TOP3BO95985 FAM86GP-201ENST00000448322 971 ntBASIC16.95■□□□□ 0.3
TOP3BO95985 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.95■□□□□ 0.3
TOP3BO95985 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.95■□□□□ 0.3
TOP3BO95985 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.95■□□□□ 0.3
TOP3BO95985 AL589182.2-201ENST00000619332 1049 ntBASIC16.95■□□□□ 0.3
TOP3BO95985 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.95■□□□□ 0.3
TOP3BO95985 HYMAI-201ENST00000635591 3347 ntBASIC16.95■□□□□ 0.3
TOP3BO95985 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
TOP3BO95985 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 AC025580.3-201ENST00000617932 1424 ntBASIC16.95■□□□□ 0.3
TOP3BO95985 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
TOP3BO95985 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TOP3BO95985 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.95■□□□□ 0.3
TOP3BO95985 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.95■□□□□ 0.3
TOP3BO95985 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
TOP3BO95985 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
TOP3BO95985 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
TOP3BO95985 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.94■□□□□ 0.3
TOP3BO95985 PMS2P4-201ENST00000412466 1052 ntBASIC16.94■□□□□ 0.3
TOP3BO95985 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.94■□□□□ 0.3
TOP3BO95985 INGX-202ENST00000489074 768 ntBASIC16.94■□□□□ 0.3
TOP3BO95985 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.94■□□□□ 0.3
TOP3BO95985 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.94■□□□□ 0.3
TOP3BO95985 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.94■□□□□ 0.3
TOP3BO95985 AC008667.4-201ENST00000607370 168 ntBASIC16.94■□□□□ 0.3
TOP3BO95985 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.94■□□□□ 0.3
TOP3BO95985 AC092902.6-201ENST00000641783 218 ntBASIC16.94■□□□□ 0.3
TOP3BO95985 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.94■□□□□ 0.3
TOP3BO95985 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
TOP3BO95985 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
TOP3BO95985 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
TOP3BO95985 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.94■□□□□ 0.3
TOP3BO95985 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.94■□□□□ 0.3
TOP3BO95985 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TOP3BO95985 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.93■□□□□ 0.3
TOP3BO95985 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
TOP3BO95985 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
TOP3BO95985 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
TOP3BO95985 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
TOP3BO95985 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.93■□□□□ 0.3
TOP3BO95985 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.93■□□□□ 0.3
TOP3BO95985 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
TOP3BO95985 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.93■□□□□ 0.3
TOP3BO95985 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
TOP3BO95985 AC002472.2-201ENST00000442739 958 ntBASIC16.93■□□□□ 0.3
TOP3BO95985 ACTG1P14-201ENST00000446382 1122 ntBASIC16.93■□□□□ 0.3
TOP3BO95985 SIGLEC30P-201ENST00000455569 941 ntBASIC16.93■□□□□ 0.3
TOP3BO95985 AC074386.1-202ENST00000463561 864 ntBASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms