Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 SNX21-213ENST00000614929 587 ntTSL 5 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 CLN6-221ENST00000637494 765 ntTSL 5 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 AC002310.6-201ENST00000624451 1377 ntBASIC12.13□□□□□ -0.47
SMKR1H3BMG3 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 Z83836.1-201ENST00000624605 1642 ntBASIC12.12□□□□□ -0.47
SMKR1H3BMG3 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 AC112504.1-201ENST00000623415 1841 ntBASIC12.12□□□□□ -0.47
SMKR1H3BMG3 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 AC003669.1-201ENST00000334569 611 ntBASIC12.12□□□□□ -0.47
SMKR1H3BMG3 COPE-203ENST00000351079 907 ntTSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SMKR1H3BMG3 UBC-206ENST00000538617 1303 ntTSL 5 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 AC097637.2-201ENST00000624096 1997 ntBASIC12.11□□□□□ -0.47
SMKR1H3BMG3 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC12.11□□□□□ -0.47
SMKR1H3BMG3 SLC25A3P1-201ENST00000443844 931 ntBASIC12.11□□□□□ -0.47
SMKR1H3BMG3 SNORA78-201ENST00000459373 127 ntBASIC12.11□□□□□ -0.47
SMKR1H3BMG3 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
SMKR1H3BMG3 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms