Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 MIR658-201ENST00000385210 100 ntBASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 SDHAP3-202ENST00000515467 728 ntBASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 AC044860.1-202ENST00000559481 777 ntBASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 WASH4P-201ENST00000564273 1246 ntBASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PCDHGA1Q9Y5H4 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 AC022210.1-201ENST00000449856 793 ntBASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 AC124947.2-201ENST00000547118 1133 ntBASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 SRD5A3P1-201ENST00000603021 949 ntBASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PCDHGA1Q9Y5H4 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 KRT8P12-202ENST00000472924 1397 ntBASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 SPDYE17-201ENST00000412399 783 ntBASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 TTTY23B-201ENST00000442790 549 ntBASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms