Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 CALR4P-201ENST00000431943 946 ntBASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 C2orf69P2-201ENST00000562032 1123 ntBASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 MIR6727-201ENST00000620702 65 ntBASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZC3H4Q9UPT8 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC19.77■□□□□ 0.76
ZC3H4Q9UPT8 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
ZC3H4Q9UPT8 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
ZC3H4Q9UPT8 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
ZC3H4Q9UPT8 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
ZC3H4Q9UPT8 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
ZC3H4Q9UPT8 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
ZC3H4Q9UPT8 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
ZC3H4Q9UPT8 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
ZC3H4Q9UPT8 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
ZC3H4Q9UPT8 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
ZC3H4Q9UPT8 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 SLC25A24P2-201ENST00000415059 510 ntBASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 RAD18-204ENST00000418463 563 ntTSL 4 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 RAD18-205ENST00000421052 582 ntTSL 3 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 AC025048.3-201ENST00000590609 569 ntBASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 AL391069.4-201ENST00000609583 481 ntBASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 AC005702.4-201ENST00000618393 416 ntBASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 CU634019.7-201ENST00000624153 1185 ntBASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 FP236241.2-201ENST00000624906 1185 ntBASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms