Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
VPS11Q9H270 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS11Q9H270 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
VPS11Q9H270 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS11Q9H270 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS11Q9H270 SNX33P1-201ENST00000592116 1762 ntBASIC16.67■□□□□ 0.26
VPS11Q9H270 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
VPS11Q9H270 AP005117.1-202ENST00000581724 1908 ntBASIC16.67■□□□□ 0.26
VPS11Q9H270 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS11Q9H270 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.67■□□□□ 0.26
VPS11Q9H270 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS11Q9H270 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.67■□□□□ 0.26
VPS11Q9H270 FOSL1P1-201ENST00000511041 816 ntBASIC16.67■□□□□ 0.26
VPS11Q9H270 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS11Q9H270 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 AL139424.1-201ENST00000607572 797 ntBASIC16.67■□□□□ 0.26
VPS11Q9H270 AL732292.2-201ENST00000609649 430 ntBASIC16.67■□□□□ 0.26
VPS11Q9H270 AC093458.2-201ENST00000623150 629 ntBASIC16.67■□□□□ 0.26
VPS11Q9H270 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
VPS11Q9H270 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS11Q9H270 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
VPS11Q9H270 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VPS11Q9H270 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
VPS11Q9H270 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VPS11Q9H270 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS11Q9H270 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS11Q9H270 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
VPS11Q9H270 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS11Q9H270 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS11Q9H270 AC106795.1-205ENST00000512851 1056 ntBASIC16.66■□□□□ 0.26
VPS11Q9H270 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
VPS11Q9H270 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS11Q9H270 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS11Q9H270 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS11Q9H270 AL512652.2-201ENST00000625156 1716 ntBASIC16.65■□□□□ 0.26
VPS11Q9H270 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS11Q9H270 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS11Q9H270 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
VPS11Q9H270 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS11Q9H270 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS11Q9H270 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS11Q9H270 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS11Q9H270 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS11Q9H270 AL589182.2-201ENST00000619332 1049 ntBASIC16.65■□□□□ 0.26
VPS11Q9H270 AL139288.1-201ENST00000623748 933 ntBASIC16.65■□□□□ 0.26
VPS11Q9H270 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VPS11Q9H270 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.65■□□□□ 0.26
VPS11Q9H270 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS11Q9H270 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms