Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 AL645608.8-201ENST00000606034 2086 ntBASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 PKIG-203ENST00000372887 769 ntTSL 3 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 AC005622.1-201ENST00000636801 1703 ntBASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC20.95■□□□□ 0.94
SHANK3Q9BYB0 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 LETM1P2-201ENST00000597330 2178 ntBASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 MIR1247-201ENST00000408206 136 ntBASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 HNRNPA1P13-201ENST00000510646 963 ntBASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 AC104596.2-201ENST00000512793 793 ntBASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 AC120045.2-201ENST00000567334 178 ntBASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 PIGL-212ENST00000581006 554 ntTSL 4 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
SHANK3Q9BYB0 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 PCDHB18P-201ENST00000524813 2368 ntBASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK3Q9BYB0 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 KRT43P-201ENST00000434019 910 ntBASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 RPL7P3-201ENST00000441388 714 ntBASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 FAM86LP-201ENST00000478302 853 ntBASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 AL359711.2-201ENST00000563105 872 ntBASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 KRT8P22-201ENST00000562317 1415 ntBASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 AL592424.1-201ENST00000563624 1536 ntBASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 RNA5SP412-201ENST00000516234 123 ntBASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms