Protein–RNA interactions for Protein: Q9BXA9

SALL3, Sal-like protein 3, humanhuman

Predictions only

Length 1,300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL3Q9BXA9 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 FAM220BP-201ENST00000377689 816 ntBASIC19.93■□□□□ 0.78
SALL3Q9BXA9 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 BX842568.4-201ENST00000421222 227 ntBASIC19.93■□□□□ 0.78
SALL3Q9BXA9 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 AC010327.4-202ENST00000591484 748 ntBASIC19.93■□□□□ 0.78
SALL3Q9BXA9 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
SALL3Q9BXA9 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 DNAJB3-201ENST00000446806 729 ntBASIC19.92■□□□□ 0.78
SALL3Q9BXA9 TIMM8BP1-201ENST00000452384 211 ntBASIC19.92■□□□□ 0.78
SALL3Q9BXA9 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 KRT8P23-201ENST00000560090 1207 ntBASIC19.92■□□□□ 0.78
SALL3Q9BXA9 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
SALL3Q9BXA9 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 UPF3AP3-201ENST00000420996 769 ntBASIC19.91■□□□□ 0.78
SALL3Q9BXA9 GPS2P2-201ENST00000430745 888 ntBASIC19.91■□□□□ 0.78
SALL3Q9BXA9 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SALL3Q9BXA9 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 AC004461.1-201ENST00000412461 403 ntBASIC19.9■□□□□ 0.78
SALL3Q9BXA9 FAM58DP-201ENST00000428076 619 ntBASIC19.9■□□□□ 0.78
SALL3Q9BXA9 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.9■□□□□ 0.78
SALL3Q9BXA9 CEND1P1-201ENST00000451006 455 ntBASIC19.9■□□□□ 0.78
SALL3Q9BXA9 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms