Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
IFT140Q96RY7 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC26.74■■□□□ 1.87
IFT140Q96RY7 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC26.74■■□□□ 1.87
IFT140Q96RY7 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC26.74■■□□□ 1.87
IFT140Q96RY7 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
IFT140Q96RY7 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
IFT140Q96RY7 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC26.74■■□□□ 1.87
IFT140Q96RY7 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
IFT140Q96RY7 FAM197Y7-201ENST00000432892 766 ntBASIC26.74■■□□□ 1.87
IFT140Q96RY7 IMP3P2-201ENST00000489760 475 ntBASIC26.74■■□□□ 1.87
IFT140Q96RY7 SLED1-202ENST00000512051 380 ntBASIC26.74■■□□□ 1.87
IFT140Q96RY7 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC26.74■■□□□ 1.87
IFT140Q96RY7 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC26.74■■□□□ 1.87
IFT140Q96RY7 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC26.74■■□□□ 1.87
IFT140Q96RY7 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC26.74■■□□□ 1.87
IFT140Q96RY7 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC26.74■■□□□ 1.87
IFT140Q96RY7 AL096828.3-201ENST00000615354 462 ntBASIC26.74■■□□□ 1.87
IFT140Q96RY7 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
IFT140Q96RY7 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
IFT140Q96RY7 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC26.73■■□□□ 1.87
IFT140Q96RY7 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC26.73■■□□□ 1.87
IFT140Q96RY7 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
IFT140Q96RY7 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
IFT140Q96RY7 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC26.73■■□□□ 1.87
IFT140Q96RY7 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC26.73■■□□□ 1.87
IFT140Q96RY7 FNTAP2-201ENST00000430308 634 ntBASIC26.73■■□□□ 1.87
IFT140Q96RY7 PTPA-217ENST00000434095 870 ntTSL 2 BASIC26.73■■□□□ 1.87
IFT140Q96RY7 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC26.73■■□□□ 1.87
IFT140Q96RY7 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC26.73■■□□□ 1.87
IFT140Q96RY7 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC26.73■■□□□ 1.87
IFT140Q96RY7 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC26.73■■□□□ 1.87
IFT140Q96RY7 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC26.73■■□□□ 1.87
IFT140Q96RY7 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC26.73■■□□□ 1.87
IFT140Q96RY7 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC26.73■■□□□ 1.87
IFT140Q96RY7 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
IFT140Q96RY7 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
IFT140Q96RY7 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
IFT140Q96RY7 AHCYP2-201ENST00000430630 1300 ntBASIC26.73■■□□□ 1.87
IFT140Q96RY7 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC26.73■■□□□ 1.87
IFT140Q96RY7 AC092978.1-202ENST00000637590 1327 ntBASIC26.73■■□□□ 1.87
IFT140Q96RY7 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
IFT140Q96RY7 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
IFT140Q96RY7 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 PCDHB17P-201ENST00000539533 2393 ntBASIC26.72■■□□□ 1.87
IFT140Q96RY7 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
IFT140Q96RY7 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
IFT140Q96RY7 AC004987.2-201ENST00000395959 1148 ntBASIC26.72■■□□□ 1.87
IFT140Q96RY7 KRTAP10-13P-201ENST00000412914 571 ntBASIC26.72■■□□□ 1.87
IFT140Q96RY7 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
IFT140Q96RY7 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
IFT140Q96RY7 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
IFT140Q96RY7 REXO1L8P-201ENST00000604378 1897 ntBASIC26.72■■□□□ 1.87
IFT140Q96RY7 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 AC092053.1-201ENST00000605787 1936 ntBASIC26.71■■□□□ 1.87
IFT140Q96RY7 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
IFT140Q96RY7 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
IFT140Q96RY7 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
IFT140Q96RY7 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
IFT140Q96RY7 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
IFT140Q96RY7 MIR5572-201ENST00000583188 137 ntBASIC26.71■■□□□ 1.87
IFT140Q96RY7 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
IFT140Q96RY7 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
IFT140Q96RY7 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
IFT140Q96RY7 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC26.71■■□□□ 1.87
IFT140Q96RY7 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
IFT140Q96RY7 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
IFT140Q96RY7 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
IFT140Q96RY7 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.87
IFT140Q96RY7 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC26.7■■□□□ 1.87
IFT140Q96RY7 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
IFT140Q96RY7 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC26.7■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms