Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ENSA-206ENST00000361631 725 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AC092474.2-201ENST00000424288 719 ntBASIC5.14□□□□□ -1.59
SYNE1Q8NF91 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AC087641.1-201ENST00000557561 1021 ntBASIC5.14□□□□□ -1.59
SYNE1Q8NF91 COQ9-214ENST00000567933 882 ntTSL 3 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 STXBP1-221ENST00000637953 3925 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 OVCH1-AS1-204ENST00000641955 5529 ntBASIC5.14□□□□□ -1.59
SYNE1Q8NF91 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 GSAP-205ENST00000430584 600 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AL035252.4-201ENST00000624174 288 ntBASIC5.13□□□□□ -1.59
SYNE1Q8NF91 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 SEC24B-202ENST00000399100 3780 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 HFE2-206ENST00000634927 506 ntTSL 4 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AC067930.6-201ENST00000623257 4947 ntBASIC5.13□□□□□ -1.59
SYNE1Q8NF91 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 BSG-215ENST00000618006 1329 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms