Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 ADM-202ENST00000524948 584 ntTSL 2 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 AC026740.1-201ENST00000607068 791 ntBASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 FTH1P14-201ENST00000482930 551 ntBASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 AC036164.1-201ENST00000570544 333 ntBASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 ATF5-205ENST00000600336 682 ntTSL 2 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 RHOXF1P1-202ENST00000635473 501 ntBASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 AC008687.7-202ENST00000637404 953 ntBASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC1BQ8NDV3 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
SMC1BQ8NDV3 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SMC1BQ8NDV3 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 TPO-206ENST00000382269 1155 ntTSL 5 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 AC016694.1-201ENST00000434179 700 ntBASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 RN7SL769P-201ENST00000469386 295 ntBASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.39■□□□□ 0.69
SMC1BQ8NDV3 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms