Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP54Q70EL1 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
USP54Q70EL1 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC21.55■■□□□ 1.04
USP54Q70EL1 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP54Q70EL1 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP54Q70EL1 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP54Q70EL1 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP54Q70EL1 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
USP54Q70EL1 MPV17-206ENST00000402722 827 ntTSL 3 BASIC21.55■■□□□ 1.04
USP54Q70EL1 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC21.55■■□□□ 1.04
USP54Q70EL1 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC21.55■■□□□ 1.04
USP54Q70EL1 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
USP54Q70EL1 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC21.55■■□□□ 1.04
USP54Q70EL1 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP54Q70EL1 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC21.55■■□□□ 1.04
USP54Q70EL1 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC21.55■■□□□ 1.04
USP54Q70EL1 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP54Q70EL1 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
USP54Q70EL1 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP54Q70EL1 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC21.54■■□□□ 1.04
USP54Q70EL1 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
USP54Q70EL1 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP54Q70EL1 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
USP54Q70EL1 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP54Q70EL1 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC21.54■■□□□ 1.04
USP54Q70EL1 CROCCP4-201ENST00000457096 498 ntBASIC21.54■■□□□ 1.04
USP54Q70EL1 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
USP54Q70EL1 AC068587.3-201ENST00000526613 355 ntBASIC21.54■■□□□ 1.04
USP54Q70EL1 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC21.54■■□□□ 1.04
USP54Q70EL1 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
USP54Q70EL1 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP54Q70EL1 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP54Q70EL1 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
USP54Q70EL1 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC21.54■■□□□ 1.04
USP54Q70EL1 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP54Q70EL1 REXO1L8P-201ENST00000604378 1897 ntBASIC21.54■■□□□ 1.04
USP54Q70EL1 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC21.54■■□□□ 1.04
USP54Q70EL1 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC21.54■■□□□ 1.04
USP54Q70EL1 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP54Q70EL1 ZBTB45P2-201ENST00000452245 1531 ntBASIC21.54■■□□□ 1.04
USP54Q70EL1 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP54Q70EL1 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
USP54Q70EL1 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC21.53■■□□□ 1.04
USP54Q70EL1 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
USP54Q70EL1 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC21.53■■□□□ 1.04
USP54Q70EL1 AC120045.2-201ENST00000567334 178 ntBASIC21.53■■□□□ 1.04
USP54Q70EL1 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
USP54Q70EL1 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
USP54Q70EL1 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 BOLA2P3-201ENST00000404566 256 ntBASIC21.53■■□□□ 1.04
USP54Q70EL1 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC21.53■■□□□ 1.04
USP54Q70EL1 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC21.53■■□□□ 1.04
USP54Q70EL1 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC21.53■■□□□ 1.04
USP54Q70EL1 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC21.53■■□□□ 1.04
USP54Q70EL1 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
USP54Q70EL1 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC21.53■■□□□ 1.04
USP54Q70EL1 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC21.53■■□□□ 1.04
USP54Q70EL1 AC097359.3-201ENST00000603982 1210 ntBASIC21.53■■□□□ 1.04
USP54Q70EL1 MIR6775-201ENST00000617557 69 ntBASIC21.53■■□□□ 1.04
USP54Q70EL1 ABBA01031660.1-201ENST00000635219 756 ntBASIC21.53■■□□□ 1.04
USP54Q70EL1 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP54Q70EL1 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP54Q70EL1 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP54Q70EL1 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC21.52■■□□□ 1.04
USP54Q70EL1 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP54Q70EL1 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP54Q70EL1 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC21.52■■□□□ 1.04
USP54Q70EL1 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
USP54Q70EL1 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP54Q70EL1 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP54Q70EL1 GCK-202ENST00000345378 2421 ntTSL 2 BASIC21.52■■□□□ 1.04
USP54Q70EL1 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP54Q70EL1 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
USP54Q70EL1 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
USP54Q70EL1 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
USP54Q70EL1 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC21.52■■□□□ 1.04
USP54Q70EL1 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC21.52■■□□□ 1.04
USP54Q70EL1 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC21.52■■□□□ 1.04
USP54Q70EL1 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC21.52■■□□□ 1.04
USP54Q70EL1 AL033527.5-201ENST00000641382 801 ntBASIC21.52■■□□□ 1.04
USP54Q70EL1 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC21.52■■□□□ 1.04
USP54Q70EL1 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.04
USP54Q70EL1 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP54Q70EL1 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC21.52■■□□□ 1.04
USP54Q70EL1 PDIA3P1-201ENST00000471856 1510 ntBASIC21.52■■□□□ 1.04
USP54Q70EL1 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP54Q70EL1 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
USP54Q70EL1 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.52■■□□□ 1.03
USP54Q70EL1 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms