Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN9AQ15858 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.41■□□□□ 0.7
SCN9AQ15858 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC19.41■□□□□ 0.7
SCN9AQ15858 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
SCN9AQ15858 AC078925.2-201ENST00000624013 1973 ntBASIC19.41■□□□□ 0.7
SCN9AQ15858 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SCN9AQ15858 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SCN9AQ15858 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SCN9AQ15858 MIR1908-201ENST00000410394 80 ntBASIC19.41■□□□□ 0.7
SCN9AQ15858 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC19.41■□□□□ 0.7
SCN9AQ15858 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC19.41■□□□□ 0.7
SCN9AQ15858 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.41■□□□□ 0.7
SCN9AQ15858 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SCN9AQ15858 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.41■□□□□ 0.7
SCN9AQ15858 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.41■□□□□ 0.7
SCN9AQ15858 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.41■□□□□ 0.7
SCN9AQ15858 HNRNPA1P48-201ENST00000562726 1377 ntBASIC19.41■□□□□ 0.7
SCN9AQ15858 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
SCN9AQ15858 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SCN9AQ15858 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC19.41■□□□□ 0.7
SCN9AQ15858 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.41■□□□□ 0.7
SCN9AQ15858 CSF2RBP1-201ENST00000447905 391 ntBASIC19.41■□□□□ 0.7
SCN9AQ15858 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC19.41■□□□□ 0.7
SCN9AQ15858 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SCN9AQ15858 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC19.41■□□□□ 0.7
SCN9AQ15858 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SCN9AQ15858 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC19.41■□□□□ 0.7
SCN9AQ15858 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC19.41■□□□□ 0.7
SCN9AQ15858 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.41■□□□□ 0.7
SCN9AQ15858 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN9AQ15858 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.4■□□□□ 0.7
SCN9AQ15858 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.4■□□□□ 0.7
SCN9AQ15858 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.4■□□□□ 0.7
SCN9AQ15858 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC19.4■□□□□ 0.7
SCN9AQ15858 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SCN9AQ15858 AC074338.1-201ENST00000416825 156 ntBASIC19.4■□□□□ 0.7
SCN9AQ15858 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC19.4■□□□□ 0.7
SCN9AQ15858 KRT18P64-201ENST00000434946 1219 ntBASIC19.4■□□□□ 0.7
SCN9AQ15858 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC19.4■□□□□ 0.7
SCN9AQ15858 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC19.4■□□□□ 0.7
SCN9AQ15858 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN9AQ15858 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN9AQ15858 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.4■□□□□ 0.7
SCN9AQ15858 PCDHB18P-201ENST00000524813 2368 ntBASIC19.4■□□□□ 0.7
SCN9AQ15858 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SCN9AQ15858 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
SCN9AQ15858 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.4■□□□□ 0.7
SCN9AQ15858 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SCN9AQ15858 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
SCN9AQ15858 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
SCN9AQ15858 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SCN9AQ15858 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SCN9AQ15858 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC19.39■□□□□ 0.7
SCN9AQ15858 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.39■□□□□ 0.7
SCN9AQ15858 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC19.39■□□□□ 0.7
SCN9AQ15858 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC19.39■□□□□ 0.7
SCN9AQ15858 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
SCN9AQ15858 ABBA01031660.1-201ENST00000635219 756 ntBASIC19.39■□□□□ 0.7
SCN9AQ15858 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SCN9AQ15858 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
SCN9AQ15858 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN9AQ15858 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SCN9AQ15858 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.39■□□□□ 0.69
SCN9AQ15858 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN9AQ15858 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.39■□□□□ 0.69
SCN9AQ15858 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN9AQ15858 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SCN9AQ15858 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
SCN9AQ15858 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN9AQ15858 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC19.39■□□□□ 0.69
SCN9AQ15858 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN9AQ15858 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SCN9AQ15858 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
SCN9AQ15858 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.39■□□□□ 0.69
SCN9AQ15858 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
SCN9AQ15858 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SCN9AQ15858 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN9AQ15858 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC19.39■□□□□ 0.69
SCN9AQ15858 RPL13P2-201ENST00000440687 659 ntBASIC19.39■□□□□ 0.69
SCN9AQ15858 CU634019.7-201ENST00000624153 1185 ntBASIC19.39■□□□□ 0.69
SCN9AQ15858 FP236241.2-201ENST00000624906 1185 ntBASIC19.39■□□□□ 0.69
SCN9AQ15858 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN9AQ15858 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SCN9AQ15858 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN9AQ15858 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN9AQ15858 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SCN9AQ15858 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN9AQ15858 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms