Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 AL162727.3-201ENST00000635661 2787 ntBASIC15.67■□□□□ 0.1
LIM2P55344 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 AL513523.2-202ENST00000427283 2040 ntBASIC15.67■□□□□ 0.1
LIM2P55344 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.67■□□□□ 0.1
LIM2P55344 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
LIM2P55344 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 BX842568.4-201ENST00000421222 227 ntBASIC15.67■□□□□ 0.1
LIM2P55344 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.67■□□□□ 0.1
LIM2P55344 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.67■□□□□ 0.1
LIM2P55344 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 DNAJB3-201ENST00000446806 729 ntBASIC15.67■□□□□ 0.1
LIM2P55344 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
LIM2P55344 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.67■□□□□ 0.1
LIM2P55344 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 AC020765.3-201ENST00000613051 740 ntBASIC15.67■□□□□ 0.1
LIM2P55344 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.67■□□□□ 0.1
LIM2P55344 AC092902.6-201ENST00000641783 218 ntBASIC15.67■□□□□ 0.1
LIM2P55344 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.67■□□□□ 0.1
LIM2P55344 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.67■□□□□ 0.1
LIM2P55344 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.67■□□□□ 0.1
LIM2P55344 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
LIM2P55344 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
LIM2P55344 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.67■□□□□ 0.1
LIM2P55344 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 PCGF3-213ENST00000620529 1899 ntBASIC15.67■□□□□ 0.1
LIM2P55344 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.67■□□□□ 0.1
LIM2P55344 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
LIM2P55344 AC016027.1-202ENST00000607927 1699 ntBASIC15.67■□□□□ 0.1
LIM2P55344 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
LIM2P55344 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.66■□□□□ 0.1
LIM2P55344 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.66■□□□□ 0.1
LIM2P55344 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LIM2P55344 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.66■□□□□ 0.1
LIM2P55344 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LIM2P55344 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.66■□□□□ 0.1
LIM2P55344 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.66■□□□□ 0.1
LIM2P55344 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LIM2P55344 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LIM2P55344 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.66■□□□□ 0.1
LIM2P55344 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 ALG1L5P-201ENST00000482043 771 ntBASIC15.66■□□□□ 0.1
LIM2P55344 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.66■□□□□ 0.1
LIM2P55344 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.66■□□□□ 0.1
LIM2P55344 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
LIM2P55344 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
LIM2P55344 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LIM2P55344 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
LIM2P55344 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.66■□□□□ 0.1
LIM2P55344 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.66■□□□□ 0.1
LIM2P55344 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIM2P55344 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIM2P55344 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIM2P55344 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIM2P55344 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
LIM2P55344 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LIM2P55344 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
LIM2P55344 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
LIM2P55344 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.65■□□□□ 0.1
LIM2P55344 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.65■□□□□ 0.1
LIM2P55344 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.65■□□□□ 0.1
LIM2P55344 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIM2P55344 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
LIM2P55344 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LIM2P55344 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LIM2P55344 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LIM2P55344 HTR5BP-201ENST00000430851 1154 ntBASIC15.65■□□□□ 0.1
LIM2P55344 MKNK2P1-201ENST00000437526 628 ntBASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms