Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC21.36■■□□□ 1.01
COL18A1P39060 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
COL18A1P39060 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
COL18A1P39060 MSTO2P-201ENST00000314835 1709 ntBASIC21.36■■□□□ 1.01
COL18A1P39060 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 LETM1P2-201ENST00000597330 2178 ntBASIC21.36■■□□□ 1.01
COL18A1P39060 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC21.36■■□□□ 1.01
COL18A1P39060 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 AC092933.1-201ENST00000393644 945 ntBASIC21.36■■□□□ 1.01
COL18A1P39060 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC21.36■■□□□ 1.01
COL18A1P39060 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC21.36■■□□□ 1.01
COL18A1P39060 AP000812.2-201ENST00000538934 718 ntBASIC21.36■■□□□ 1.01
COL18A1P39060 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC21.36■■□□□ 1.01
COL18A1P39060 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC21.36■■□□□ 1.01
COL18A1P39060 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC21.36■■□□□ 1.01
COL18A1P39060 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC21.36■■□□□ 1.01
COL18A1P39060 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC21.35■■□□□ 1.01
COL18A1P39060 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC21.35■■□□□ 1.01
COL18A1P39060 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL18A1P39060 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC21.35■■□□□ 1.01
COL18A1P39060 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL18A1P39060 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL18A1P39060 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL18A1P39060 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC21.35■■□□□ 1.01
COL18A1P39060 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
COL18A1P39060 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL18A1P39060 AP001889.1-201ENST00000525414 633 ntBASIC21.35■■□□□ 1.01
COL18A1P39060 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC21.35■■□□□ 1.01
COL18A1P39060 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC21.35■■□□□ 1.01
COL18A1P39060 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC21.35■■□□□ 1.01
COL18A1P39060 KRT90P-201ENST00000549264 1064 ntBASIC21.35■■□□□ 1.01
COL18A1P39060 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC21.35■■□□□ 1.01
COL18A1P39060 AC009542.2-202ENST00000619004 1067 ntBASIC21.35■■□□□ 1.01
COL18A1P39060 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
COL18A1P39060 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC21.35■■□□□ 1.01
COL18A1P39060 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
COL18A1P39060 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.34■■□□□ 1.01
COL18A1P39060 AL592424.1-201ENST00000563624 1536 ntBASIC21.34■■□□□ 1.01
COL18A1P39060 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL18A1P39060 AC004987.2-201ENST00000395959 1148 ntBASIC21.34■■□□□ 1.01
COL18A1P39060 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC21.34■■□□□ 1.01
COL18A1P39060 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC21.34■■□□□ 1.01
COL18A1P39060 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
COL18A1P39060 HNRNPUP1-201ENST00000554987 333 ntBASIC21.34■■□□□ 1.01
COL18A1P39060 AC244093.1-201ENST00000610837 814 ntBASIC21.34■■□□□ 1.01
COL18A1P39060 AC005252.2-201ENST00000624630 1141 ntBASIC21.34■■□□□ 1.01
COL18A1P39060 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
COL18A1P39060 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL18A1P39060 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL18A1P39060 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL18A1P39060 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL18A1P39060 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC21.34■■□□□ 1.01
COL18A1P39060 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC21.34■■□□□ 1.01
COL18A1P39060 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL18A1P39060 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
COL18A1P39060 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL18A1P39060 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1.01
COL18A1P39060 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL18A1P39060 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL18A1P39060 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
COL18A1P39060 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC21.33■■□□□ 1.01
COL18A1P39060 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC21.33■■□□□ 1.01
COL18A1P39060 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC21.33■■□□□ 1.01
COL18A1P39060 AC012441.1-201ENST00000446669 685 ntBASIC21.33■■□□□ 1.01
COL18A1P39060 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL18A1P39060 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC21.33■■□□□ 1.01
COL18A1P39060 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC21.33■■□□□ 1.01
COL18A1P39060 DUX4L45-201ENST00000566406 1057 ntBASIC21.33■■□□□ 1.01
COL18A1P39060 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC21.33■■□□□ 1.01
COL18A1P39060 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
COL18A1P39060 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
COL18A1P39060 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL18A1P39060 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL18A1P39060 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL18A1P39060 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL18A1P39060 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL18A1P39060 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL18A1P39060 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL18A1P39060 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL18A1P39060 APOC3-202ENST00000375345 604 ntTSL 5 BASIC21.33■■□□□ 1
COL18A1P39060 GZMB-202ENST00000382540 816 ntTSL 5 BASIC21.33■■□□□ 1
COL18A1P39060 AC004945.1-201ENST00000416738 983 ntBASIC21.33■■□□□ 1
COL18A1P39060 SOCS2P1-201ENST00000417727 557 ntBASIC21.33■■□□□ 1
COL18A1P39060 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL18A1P39060 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC21.33■■□□□ 1
COL18A1P39060 RIT1-205ENST00000539040 919 ntTSL 2 BASIC21.33■■□□□ 1
COL18A1P39060 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1
COL18A1P39060 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC21.33■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms