Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC12.79□□□□□ -0.36
HOXD3P31249 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
HOXD3P31249 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
HOXD3P31249 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXD3P31249 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXD3P31249 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
HOXD3P31249 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
HOXD3P31249 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HOXD3P31249 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXD3P31249 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXD3P31249 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXD3P31249 RBPMS2P1-201ENST00000437762 623 ntBASIC12.78□□□□□ -0.36
HOXD3P31249 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC12.78□□□□□ -0.36
HOXD3P31249 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXD3P31249 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXD3P31249 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXD3P31249 AC069335.1-201ENST00000489972 472 ntBASIC12.78□□□□□ -0.36
HOXD3P31249 IGHV3-62-201ENST00000520057 340 ntBASIC12.78□□□□□ -0.36
HOXD3P31249 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXD3P31249 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 AC243562.1-201ENST00000560672 389 ntBASIC12.78□□□□□ -0.36
HOXD3P31249 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC12.78□□□□□ -0.36
HOXD3P31249 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC12.78□□□□□ -0.36
HOXD3P31249 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
HOXD3P31249 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 AL603756.1-201ENST00000606511 2163 ntBASIC12.78□□□□□ -0.36
HOXD3P31249 AKAP8P1-201ENST00000434743 1349 ntBASIC12.78□□□□□ -0.36
HOXD3P31249 AC020916.1-201ENST00000587762 1774 ntBASIC12.78□□□□□ -0.36
HOXD3P31249 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC12.78□□□□□ -0.36
HOXD3P31249 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC12.78□□□□□ -0.36
HOXD3P31249 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXD3P31249 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 WASH6P-202ENST00000359512 1437 ntBASIC12.78□□□□□ -0.36
HOXD3P31249 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
HOXD3P31249 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXD3P31249 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXD3P31249 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HOXD3P31249 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC12.78□□□□□ -0.36
HOXD3P31249 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.78□□□□□ -0.36
HOXD3P31249 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
HOXD3P31249 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
HOXD3P31249 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
HOXD3P31249 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HOXD3P31249 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
HOXD3P31249 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC12.77□□□□□ -0.36
HOXD3P31249 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC12.77□□□□□ -0.36
HOXD3P31249 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
HOXD3P31249 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC12.77□□□□□ -0.36
HOXD3P31249 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
HOXD3P31249 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC12.77□□□□□ -0.36
HOXD3P31249 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HOXD3P31249 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
HOXD3P31249 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC12.77□□□□□ -0.36
HOXD3P31249 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
HOXD3P31249 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HOXD3P31249 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
HOXD3P31249 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
HOXD3P31249 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HOXD3P31249 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
HOXD3P31249 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXD3P31249 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC12.77□□□□□ -0.37
HOXD3P31249 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXD3P31249 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC12.77□□□□□ -0.37
HOXD3P31249 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC12.77□□□□□ -0.37
HOXD3P31249 BASP1P1-201ENST00000430708 665 ntBASIC12.77□□□□□ -0.37
HOXD3P31249 WBP2-203ENST00000433525 928 ntTSL 2 BASIC12.77□□□□□ -0.37
HOXD3P31249 AC244107.1-201ENST00000442033 332 ntBASIC12.77□□□□□ -0.37
HOXD3P31249 AC125807.1-201ENST00000483097 614 ntBASIC12.77□□□□□ -0.37
HOXD3P31249 IGHV3-42-201ENST00000520410 361 ntBASIC12.77□□□□□ -0.37
HOXD3P31249 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
HOXD3P31249 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HOXD3P31249 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC12.77□□□□□ -0.37
HOXD3P31249 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC12.77□□□□□ -0.37
HOXD3P31249 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXD3P31249 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms