Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.66■□□□□ 0.26
PTPN4P29074 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.66■□□□□ 0.26
PTPN4P29074 EGFEM1P-202ENST00000431685 1563 ntBASIC16.66■□□□□ 0.26
PTPN4P29074 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.66■□□□□ 0.26
PTPN4P29074 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.66■□□□□ 0.26
PTPN4P29074 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 AP002490.2-201ENST00000524791 560 ntBASIC16.66■□□□□ 0.26
PTPN4P29074 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.66■□□□□ 0.26
PTPN4P29074 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 AC105339.3-201ENST00000560043 636 ntBASIC16.66■□□□□ 0.26
PTPN4P29074 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.66■□□□□ 0.26
PTPN4P29074 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 AC027601.4-201ENST00000611259 610 ntBASIC16.66■□□□□ 0.26
PTPN4P29074 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.66■□□□□ 0.26
PTPN4P29074 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
PTPN4P29074 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
PTPN4P29074 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN4P29074 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PTPN4P29074 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN4P29074 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PTPN4P29074 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN4P29074 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.65■□□□□ 0.26
PTPN4P29074 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.65■□□□□ 0.26
PTPN4P29074 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN4P29074 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.65■□□□□ 0.26
PTPN4P29074 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 BX842568.4-201ENST00000421222 227 ntBASIC16.65■□□□□ 0.26
PTPN4P29074 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PTPN4P29074 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.65■□□□□ 0.26
PTPN4P29074 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN4P29074 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 AC079776.2-201ENST00000641154 1609 ntBASIC16.65■□□□□ 0.26
PTPN4P29074 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.65■□□□□ 0.26
PTPN4P29074 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN4P29074 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PTPN4P29074 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PTPN4P29074 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.65■□□□□ 0.26
PTPN4P29074 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.65■□□□□ 0.26
PTPN4P29074 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PTPN4P29074 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN4P29074 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
PTPN4P29074 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
PTPN4P29074 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 AL645728.1-201ENST00000366221 2101 ntBASIC16.64■□□□□ 0.25
PTPN4P29074 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.64■□□□□ 0.25
PTPN4P29074 PMPCAP1-201ENST00000508114 1576 ntBASIC16.64■□□□□ 0.25
PTPN4P29074 AC010460.3-201ENST00000511359 1579 ntBASIC16.64■□□□□ 0.25
PTPN4P29074 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
PTPN4P29074 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.64■□□□□ 0.25
PTPN4P29074 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.64■□□□□ 0.25
PTPN4P29074 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.64■□□□□ 0.25
PTPN4P29074 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PTPN4P29074 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 MIR1233-2-201ENST00000408138 82 ntBASIC16.64■□□□□ 0.25
PTPN4P29074 MIR1233-1-201ENST00000408722 82 ntBASIC16.64■□□□□ 0.25
PTPN4P29074 LAGE3P1-201ENST00000425356 484 ntBASIC16.64■□□□□ 0.25
PTPN4P29074 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 RNA5SP415-201ENST00000517246 115 ntBASIC16.64■□□□□ 0.25
PTPN4P29074 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.64■□□□□ 0.25
PTPN4P29074 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.64■□□□□ 0.25
PTPN4P29074 Z83851.2-201ENST00000609564 659 ntBASIC16.64■□□□□ 0.25
PTPN4P29074 FAM197Y3-203ENST00000618346 717 ntBASIC16.64■□□□□ 0.25
PTPN4P29074 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.64■□□□□ 0.25
PTPN4P29074 AL022326.1-202ENST00000641533 845 ntBASIC16.64■□□□□ 0.25
PTPN4P29074 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.64■□□□□ 0.25
PTPN4P29074 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms