Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL3A1P02461 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL3A1P02461 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL3A1P02461 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL3A1P02461 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL3A1P02461 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL3A1P02461 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL3A1P02461 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.04
COL3A1P02461 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL3A1P02461 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL3A1P02461 LHX6-205ENST00000464484 666 ntTSL 2 BASIC21.52■■□□□ 1.04
COL3A1P02461 RNA5SP421-201ENST00000516864 134 ntBASIC21.52■■□□□ 1.04
COL3A1P02461 MIR4745-201ENST00000577608 62 ntBASIC21.52■■□□□ 1.04
COL3A1P02461 LTB4R2-202ENST00000528054 3092 ntBASIC21.52■■□□□ 1.04
COL3A1P02461 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC21.52■■□□□ 1.04
COL3A1P02461 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.52■■□□□ 1.04
COL3A1P02461 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC21.52■■□□□ 1.04
COL3A1P02461 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC21.52■■□□□ 1.04
COL3A1P02461 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL3A1P02461 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL3A1P02461 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL3A1P02461 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL3A1P02461 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL3A1P02461 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL3A1P02461 AL691432.1-201ENST00000596308 1422 ntBASIC21.52■■□□□ 1.03
COL3A1P02461 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL3A1P02461 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL3A1P02461 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC21.52■■□□□ 1.03
COL3A1P02461 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL3A1P02461 AL035633.1-201ENST00000406139 838 ntBASIC21.52■■□□□ 1.03
COL3A1P02461 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC21.52■■□□□ 1.03
COL3A1P02461 SPTLC1P1-201ENST00000447199 261 ntBASIC21.52■■□□□ 1.03
COL3A1P02461 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC21.52■■□□□ 1.03
COL3A1P02461 GREM1-201ENST00000560677 623 ntTSL 4 BASIC21.52■■□□□ 1.03
COL3A1P02461 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC21.52■■□□□ 1.03
COL3A1P02461 AC025048.3-201ENST00000590609 569 ntBASIC21.52■■□□□ 1.03
COL3A1P02461 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC21.52■■□□□ 1.03
COL3A1P02461 AC005702.4-201ENST00000618393 416 ntBASIC21.52■■□□□ 1.03
COL3A1P02461 AC008761.3-201ENST00000624803 892 ntBASIC21.52■■□□□ 1.03
COL3A1P02461 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL3A1P02461 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
COL3A1P02461 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
COL3A1P02461 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
COL3A1P02461 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL3A1P02461 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
COL3A1P02461 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC21.51■■□□□ 1.03
COL3A1P02461 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL3A1P02461 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL3A1P02461 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC21.51■■□□□ 1.03
COL3A1P02461 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL3A1P02461 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL3A1P02461 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
COL3A1P02461 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL3A1P02461 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
COL3A1P02461 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL3A1P02461 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL3A1P02461 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
COL3A1P02461 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL3A1P02461 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL3A1P02461 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
COL3A1P02461 RN7SL618P-201ENST00000477850 296 ntBASIC21.51■■□□□ 1.03
COL3A1P02461 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL3A1P02461 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC21.51■■□□□ 1.03
COL3A1P02461 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC21.5■■□□□ 1.03
COL3A1P02461 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC21.5■■□□□ 1.03
COL3A1P02461 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
COL3A1P02461 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC21.5■■□□□ 1.03
COL3A1P02461 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
COL3A1P02461 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
COL3A1P02461 AC092364.2-201ENST00000596710 2692 ntBASIC21.5■■□□□ 1.03
COL3A1P02461 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
COL3A1P02461 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
COL3A1P02461 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 CALY-202ENST00000368555 783 ntTSL 2 BASIC21.5■■□□□ 1.03
COL3A1P02461 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC21.5■■□□□ 1.03
COL3A1P02461 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 RAD18-204ENST00000418463 563 ntTSL 4 BASIC21.5■■□□□ 1.03
COL3A1P02461 RAD18-205ENST00000421052 582 ntTSL 3 BASIC21.5■■□□□ 1.03
COL3A1P02461 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 AC104794.3-201ENST00000566840 1248 ntBASIC21.5■■□□□ 1.03
COL3A1P02461 PRR29-204ENST00000577953 565 ntTSL 4 BASIC21.5■■□□□ 1.03
COL3A1P02461 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC21.5■■□□□ 1.03
COL3A1P02461 BNIP3P1-202ENST00000550043 1585 ntBASIC21.5■■□□□ 1.03
COL3A1P02461 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
COL3A1P02461 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms