Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC11O43248 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.74■□□□□ 0.27
HOXC11O43248 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.74■□□□□ 0.27
HOXC11O43248 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.74■□□□□ 0.27
HOXC11O43248 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
HOXC11O43248 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.74■□□□□ 0.27
HOXC11O43248 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC11O43248 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC11O43248 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.74■□□□□ 0.27
HOXC11O43248 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.74■□□□□ 0.27
HOXC11O43248 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC11O43248 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.74■□□□□ 0.27
HOXC11O43248 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC11O43248 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.74■□□□□ 0.27
HOXC11O43248 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC11O43248 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC11O43248 AC018695.7-201ENST00000624587 2492 ntBASIC16.74■□□□□ 0.27
HOXC11O43248 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC11O43248 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.73■□□□□ 0.27
HOXC11O43248 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.73■□□□□ 0.27
HOXC11O43248 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.73■□□□□ 0.27
HOXC11O43248 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.73■□□□□ 0.27
HOXC11O43248 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.73■□□□□ 0.27
HOXC11O43248 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.73■□□□□ 0.27
HOXC11O43248 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HOXC11O43248 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 PIN1P1-201ENST00000412108 996 ntBASIC16.73■□□□□ 0.27
HOXC11O43248 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.73■□□□□ 0.27
HOXC11O43248 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.73■□□□□ 0.27
HOXC11O43248 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.73■□□□□ 0.27
HOXC11O43248 SPTLC1P1-201ENST00000447199 261 ntBASIC16.73■□□□□ 0.27
HOXC11O43248 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.73■□□□□ 0.27
HOXC11O43248 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.73■□□□□ 0.27
HOXC11O43248 ZNF890P-202ENST00000530367 1156 ntBASIC16.73■□□□□ 0.27
HOXC11O43248 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.73■□□□□ 0.27
HOXC11O43248 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.73■□□□□ 0.27
HOXC11O43248 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 AC026979.3-201ENST00000607315 403 ntBASIC16.73■□□□□ 0.27
HOXC11O43248 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC11O43248 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HOXC11O43248 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HOXC11O43248 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.72■□□□□ 0.27
HOXC11O43248 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HOXC11O43248 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.72■□□□□ 0.27
HOXC11O43248 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.72■□□□□ 0.27
HOXC11O43248 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.72■□□□□ 0.27
HOXC11O43248 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HOXC11O43248 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 AC005225.4-201ENST00000557330 545 ntBASIC16.72■□□□□ 0.27
HOXC11O43248 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.72■□□□□ 0.27
HOXC11O43248 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.72■□□□□ 0.27
HOXC11O43248 AC008738.7-201ENST00000609744 511 ntBASIC16.72■□□□□ 0.27
HOXC11O43248 AC012645.4-201ENST00000610691 1061 ntBASIC16.72■□□□□ 0.27
HOXC11O43248 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
HOXC11O43248 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HOXC11O43248 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 AP001094.4-201ENST00000579008 2176 ntBASIC16.72■□□□□ 0.27
HOXC11O43248 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HOXC11O43248 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.72■□□□□ 0.27
HOXC11O43248 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HOXC11O43248 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.72■□□□□ 0.27
HOXC11O43248 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC11O43248 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms