Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC20.76■□□□□ 0.91
NPHP1O15259 PRR29-204ENST00000577953 565 ntTSL 4 BASIC20.76■□□□□ 0.91
NPHP1O15259 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP1O15259 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC20.76■□□□□ 0.91
NPHP1O15259 SERF2-217ENST00000630046 862 ntTSL 5 BASIC20.76■□□□□ 0.91
NPHP1O15259 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP1O15259 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP1O15259 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
NPHP1O15259 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
NPHP1O15259 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.76■□□□□ 0.91
NPHP1O15259 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
NPHP1O15259 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC20.75■□□□□ 0.91
NPHP1O15259 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC20.75■□□□□ 0.91
NPHP1O15259 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
NPHP1O15259 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.75■□□□□ 0.91
NPHP1O15259 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 FOXO1B-201ENST00000504678 1527 ntBASIC20.75■□□□□ 0.91
NPHP1O15259 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
NPHP1O15259 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
NPHP1O15259 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC20.75■□□□□ 0.91
NPHP1O15259 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC20.75■□□□□ 0.91
NPHP1O15259 AC009407.1-201ENST00000568958 598 ntBASIC20.75■□□□□ 0.91
NPHP1O15259 AC105021.1-202ENST00000570572 669 ntBASIC20.75■□□□□ 0.91
NPHP1O15259 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC20.75■□□□□ 0.91
NPHP1O15259 RNA5-8SN1-201ENST00000610460 153 ntBASIC20.75■□□□□ 0.91
NPHP1O15259 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC20.75■□□□□ 0.91
NPHP1O15259 RNA5-8SN5-202ENST00000612463 153 ntBASIC20.75■□□□□ 0.91
NPHP1O15259 RNA5-8SN4-201ENST00000613359 153 ntBASIC20.75■□□□□ 0.91
NPHP1O15259 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.75■□□□□ 0.91
NPHP1O15259 RNA5-8SN5-201ENST00000619471 153 ntBASIC20.75■□□□□ 0.91
NPHP1O15259 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
NPHP1O15259 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
NPHP1O15259 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
NPHP1O15259 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP1O15259 AC108860.2-201ENST00000562760 2183 ntBASIC20.75■□□□□ 0.91
NPHP1O15259 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP1O15259 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
NPHP1O15259 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NPHP1O15259 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP1O15259 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
NPHP1O15259 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP1O15259 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP1O15259 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP1O15259 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NPHP1O15259 FAM220BP-201ENST00000377689 816 ntBASIC20.74■□□□□ 0.91
NPHP1O15259 SLC25A1P3-201ENST00000395415 828 ntBASIC20.74■□□□□ 0.91
NPHP1O15259 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP1O15259 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP1O15259 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.74■□□□□ 0.91
NPHP1O15259 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP1O15259 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
NPHP1O15259 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP1O15259 IGHV3-71-201ENST00000523324 359 ntBASIC20.74■□□□□ 0.91
NPHP1O15259 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC20.74■□□□□ 0.91
NPHP1O15259 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP1O15259 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP1O15259 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
NPHP1O15259 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.74■□□□□ 0.91
NPHP1O15259 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP1O15259 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP1O15259 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP1O15259 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP1O15259 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP1O15259 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP1O15259 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
NPHP1O15259 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.73■□□□□ 0.91
NPHP1O15259 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC20.73■□□□□ 0.91
NPHP1O15259 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
NPHP1O15259 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
NPHP1O15259 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 RPS19-201ENST00000221975 500 ntTSL 3 BASIC20.73■□□□□ 0.91
NPHP1O15259 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP1O15259 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC20.73■□□□□ 0.91
NPHP1O15259 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC20.73■□□□□ 0.91
NPHP1O15259 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
NPHP1O15259 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP1O15259 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC20.73■□□□□ 0.91
NPHP1O15259 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.73■□□□□ 0.91
NPHP1O15259 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms