Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 AC025048.3-201ENST00000590609 569 ntBASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 AC074044.1-201ENST00000609673 707 ntBASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 AC005702.4-201ENST00000618393 416 ntBASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC87Q9NVE4 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 PTK7-212ENST00000476760 902 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 RRP7BP-205ENST00000566851 833 ntBASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 AC068880.1-201ENST00000507289 2297 ntBASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC87Q9NVE4 AL133338.1-201ENST00000565695 1517 ntBASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 HIST3H2BA-201ENST00000436555 524 ntBASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 TMEM261P1-201ENST00000604899 340 ntBASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC87Q9NVE4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 AC007389.4-201ENST00000454674 793 ntBASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC87Q9NVE4 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC87Q9NVE4 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms