Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 AC016734.2-201ENST00000624325 1377 ntBASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 LINC00265-3P-201ENST00000447588 903 ntBASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 TOB2P1-201ENST00000469761 992 ntBASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 AC005332.1-201ENST00000577698 1310 ntBASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CHMP1AQ9HD42 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 NSUN5P1-202ENST00000421140 1535 ntBASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 NSUN5P2-203ENST00000457352 1529 ntBASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 AL031133.1-201ENST00000406807 723 ntBASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 THAP5-204ENST00000438865 868 ntTSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 KRT17P6-201ENST00000453795 1220 ntBASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms