Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HERPUD2Q9BSE4 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HERPUD2Q9BSE4 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HERPUD2Q9BSE4 LINC02447-202ENST00000501888 2146 ntBASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 AC098831.1-202ENST00000438821 336 ntBASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 MIR4515-201ENST00000584082 81 ntBASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 AC005622.1-201ENST00000636801 1703 ntBASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HERPUD2Q9BSE4 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 AC108751.1-201ENST00000490852 363 ntBASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 CXCL1P1-201ENST00000502804 216 ntBASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 PGM5P2-202ENST00000637225 1043 ntBASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.11■□□□□ 0.33
HERPUD2Q9BSE4 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 AC069224.1-201ENST00000566372 1715 ntBASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 AP000347.1-202ENST00000435868 847 ntBASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 AC009947.1-201ENST00000444350 727 ntBASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 AC020765.3-201ENST00000613051 740 ntBASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 AC116407.3-201ENST00000623905 1129 ntBASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 AL592424.1-201ENST00000563624 1536 ntBASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HERPUD2Q9BSE4 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms