Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 RPL37AP1-201ENST00000412502 279 ntBASIC16.04■□□□□ 0.16
LMX1AQ8TE12 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 AC005225.4-201ENST00000557330 545 ntBASIC16.04■□□□□ 0.16
LMX1AQ8TE12 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 AC063926.2-201ENST00000623766 1308 ntBASIC16.03■□□□□ 0.16
LMX1AQ8TE12 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 PIN1P1-201ENST00000412108 996 ntBASIC16.03■□□□□ 0.16
LMX1AQ8TE12 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 AC093724.1-201ENST00000448659 1027 ntBASIC16.03■□□□□ 0.16
LMX1AQ8TE12 CRB3P1-201ENST00000449338 276 ntBASIC16.03■□□□□ 0.16
LMX1AQ8TE12 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1AQ8TE12 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 AC087499.5-201ENST00000452760 1342 ntBASIC16.02■□□□□ 0.16
LMX1AQ8TE12 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms