Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 LINC01115-203ENST00000606068 577 ntBASIC20.53■□□□□ 0.88
RC3H1Q5TC82 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC20.53■□□□□ 0.88
RC3H1Q5TC82 TUBB1P2-201ENST00000422712 1306 ntBASIC20.53■□□□□ 0.88
RC3H1Q5TC82 TUBB1P1-201ENST00000503144 1300 ntBASIC20.53■□□□□ 0.88
RC3H1Q5TC82 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 AC006538.1-201ENST00000567905 1585 ntBASIC20.52■□□□□ 0.88
RC3H1Q5TC82 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 EEF1DP4-201ENST00000446006 880 ntBASIC20.52■□□□□ 0.88
RC3H1Q5TC82 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 RNA5SP412-201ENST00000516234 123 ntBASIC20.52■□□□□ 0.88
RC3H1Q5TC82 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 APRT-204ENST00000563655 709 ntTSL 5 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 AC036164.1-201ENST00000570544 333 ntBASIC20.52■□□□□ 0.88
RC3H1Q5TC82 MIR5189-201ENST00000577370 114 ntBASIC20.52■□□□□ 0.88
RC3H1Q5TC82 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 AC133539.2-201ENST00000604757 467 ntBASIC20.52■□□□□ 0.88
RC3H1Q5TC82 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 AL158212.4-201ENST00000624062 1286 ntBASIC20.52■□□□□ 0.88
RC3H1Q5TC82 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 AC005622.1-201ENST00000636801 1703 ntBASIC20.52■□□□□ 0.88
RC3H1Q5TC82 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RC3H1Q5TC82 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
RC3H1Q5TC82 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC20.52■□□□□ 0.87
RC3H1Q5TC82 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RC3H1Q5TC82 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RC3H1Q5TC82 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC20.51■□□□□ 0.87
RC3H1Q5TC82 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
RC3H1Q5TC82 HNRNPA1P48-201ENST00000562726 1377 ntBASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms