Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC14.2□□□□□ -0.14
ABCA4P78363 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.2□□□□□ -0.14
ABCA4P78363 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.2□□□□□ -0.14
ABCA4P78363 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.2□□□□□ -0.14
ABCA4P78363 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.2□□□□□ -0.14
ABCA4P78363 RAB43P1-201ENST00000561790 589 ntBASIC14.2□□□□□ -0.14
ABCA4P78363 RARRES2P9-201ENST00000565168 469 ntBASIC14.2□□□□□ -0.14
ABCA4P78363 AL162274.1-201ENST00000617191 1098 ntBASIC14.2□□□□□ -0.14
ABCA4P78363 SNX12-206ENST00000622259 661 ntTSL 5 BASIC14.2□□□□□ -0.14
ABCA4P78363 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
ABCA4P78363 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.2□□□□□ -0.14
ABCA4P78363 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC14.2□□□□□ -0.14
ABCA4P78363 RHBDF1P1-201ENST00000427504 1941 ntBASIC14.19□□□□□ -0.14
ABCA4P78363 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
ABCA4P78363 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC14.19□□□□□ -0.14
ABCA4P78363 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.19□□□□□ -0.14
ABCA4P78363 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
ABCA4P78363 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.19□□□□□ -0.14
ABCA4P78363 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
ABCA4P78363 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.19□□□□□ -0.14
ABCA4P78363 AC098859.1-201ENST00000502915 1238 ntBASIC14.19□□□□□ -0.14
ABCA4P78363 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.19□□□□□ -0.14
ABCA4P78363 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
ABCA4P78363 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.19□□□□□ -0.14
ABCA4P78363 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.19□□□□□ -0.14
ABCA4P78363 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.19□□□□□ -0.14
ABCA4P78363 AC138969.3-201ENST00000546612 1459 ntBASIC14.19□□□□□ -0.14
ABCA4P78363 AC138932.2-201ENST00000548268 1459 ntBASIC14.19□□□□□ -0.14
ABCA4P78363 AC126755.4-201ENST00000549796 1459 ntBASIC14.19□□□□□ -0.14
ABCA4P78363 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
ABCA4P78363 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
ABCA4P78363 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
ABCA4P78363 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
ABCA4P78363 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC14.19□□□□□ -0.14
ABCA4P78363 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 PCDHB17P-201ENST00000539533 2393 ntBASIC14.19□□□□□ -0.14
ABCA4P78363 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC14.19□□□□□ -0.14
ABCA4P78363 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
ABCA4P78363 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
ABCA4P78363 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.18□□□□□ -0.14
ABCA4P78363 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.18□□□□□ -0.14
ABCA4P78363 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.18□□□□□ -0.14
ABCA4P78363 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.18□□□□□ -0.14
ABCA4P78363 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
ABCA4P78363 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.18□□□□□ -0.14
ABCA4P78363 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.18□□□□□ -0.14
ABCA4P78363 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.18□□□□□ -0.14
ABCA4P78363 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.18□□□□□ -0.14
ABCA4P78363 AC004840.1-201ENST00000636359 365 ntBASIC14.18□□□□□ -0.14
ABCA4P78363 FOS-208ENST00000555686 1496 ntTSL 2 BASIC14.18□□□□□ -0.14
ABCA4P78363 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA4P78363 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA4P78363 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC14.18□□□□□ -0.14
ABCA4P78363 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
ABCA4P78363 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA4P78363 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA4P78363 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA4P78363 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
ABCA4P78363 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA4P78363 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA4P78363 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC14.18□□□□□ -0.14
ABCA4P78363 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA4P78363 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA4P78363 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA4P78363 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA4P78363 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms