Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
TPM4P67936 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.62■□□□□ 0.57
TPM4P67936 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.62■□□□□ 0.57
TPM4P67936 AP005901.3-202ENST00000581653 237 ntBASIC18.62■□□□□ 0.57
TPM4P67936 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
TPM4P67936 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.62■□□□□ 0.57
TPM4P67936 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 TOP3BP1-201ENST00000420768 1380 ntBASIC18.62■□□□□ 0.57
TPM4P67936 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.62■□□□□ 0.57
TPM4P67936 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
TPM4P67936 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.62■□□□□ 0.57
TPM4P67936 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.61■□□□□ 0.57
TPM4P67936 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
TPM4P67936 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC18.61■□□□□ 0.57
TPM4P67936 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TPM4P67936 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.61■□□□□ 0.57
TPM4P67936 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TPM4P67936 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TPM4P67936 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.61■□□□□ 0.57
TPM4P67936 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
TPM4P67936 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.61■□□□□ 0.57
TPM4P67936 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC18.61■□□□□ 0.57
TPM4P67936 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
TPM4P67936 AL671710.1-201ENST00000610245 2349 ntBASIC18.61■□□□□ 0.57
TPM4P67936 NID2-208ENST00000617139 3827 ntTSL 5 BASIC18.61■□□□□ 0.57
TPM4P67936 AC097376.2-205ENST00000610159 5334 ntBASIC18.61■□□□□ 0.57
TPM4P67936 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.61■□□□□ 0.57
TPM4P67936 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM4P67936 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
TPM4P67936 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
TPM4P67936 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TPM4P67936 AC104640.1-201ENST00000562617 2109 ntBASIC18.61■□□□□ 0.57
TPM4P67936 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC18.6■□□□□ 0.57
TPM4P67936 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TPM4P67936 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
TPM4P67936 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
TPM4P67936 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
TPM4P67936 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.6■□□□□ 0.57
TPM4P67936 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 AC233702.3-201ENST00000578656 1387 ntBASIC18.6■□□□□ 0.57
TPM4P67936 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.6■□□□□ 0.57
TPM4P67936 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.6■□□□□ 0.57
TPM4P67936 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.6■□□□□ 0.57
TPM4P67936 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.6■□□□□ 0.57
TPM4P67936 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.6■□□□□ 0.57
TPM4P67936 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.6■□□□□ 0.57
TPM4P67936 AL590326.2-201ENST00000625139 305 ntBASIC18.6■□□□□ 0.57
TPM4P67936 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.6■□□□□ 0.57
TPM4P67936 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.6■□□□□ 0.57
TPM4P67936 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM4P67936 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
TPM4P67936 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TPM4P67936 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
TPM4P67936 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
TPM4P67936 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms