Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
HDAC4P56524 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
HDAC4P56524 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.29■□□□□ 0.36
HDAC4P56524 AC023274.1-201ENST00000418278 595 ntBASIC17.29■□□□□ 0.36
HDAC4P56524 AC092474.2-201ENST00000424288 719 ntBASIC17.29■□□□□ 0.36
HDAC4P56524 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
HDAC4P56524 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.29■□□□□ 0.36
HDAC4P56524 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
HDAC4P56524 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.29■□□□□ 0.36
HDAC4P56524 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.29■□□□□ 0.36
HDAC4P56524 AC068137.2-201ENST00000605408 478 ntBASIC17.29■□□□□ 0.36
HDAC4P56524 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
HDAC4P56524 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
HDAC4P56524 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
HDAC4P56524 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.29■□□□□ 0.36
HDAC4P56524 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.29■□□□□ 0.36
HDAC4P56524 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.29■□□□□ 0.36
HDAC4P56524 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HDAC4P56524 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.28■□□□□ 0.36
HDAC4P56524 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HDAC4P56524 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
HDAC4P56524 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.28■□□□□ 0.36
HDAC4P56524 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.28■□□□□ 0.36
HDAC4P56524 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.28■□□□□ 0.36
HDAC4P56524 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.28■□□□□ 0.36
HDAC4P56524 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
HDAC4P56524 AP002472.1-201ENST00000577490 586 ntBASIC17.28■□□□□ 0.36
HDAC4P56524 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.28■□□□□ 0.36
HDAC4P56524 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.28■□□□□ 0.36
HDAC4P56524 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 CICP6-201ENST00000457191 2729 ntBASIC17.28■□□□□ 0.36
HDAC4P56524 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HDAC4P56524 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
HDAC4P56524 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HDAC4P56524 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDAC4P56524 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
HDAC4P56524 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HDAC4P56524 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.28■□□□□ 0.36
HDAC4P56524 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
HDAC4P56524 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
HDAC4P56524 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.27■□□□□ 0.36
HDAC4P56524 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.27■□□□□ 0.36
HDAC4P56524 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
HDAC4P56524 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.27■□□□□ 0.36
HDAC4P56524 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.27■□□□□ 0.36
HDAC4P56524 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.27■□□□□ 0.36
HDAC4P56524 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC4P56524 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
HDAC4P56524 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC4P56524 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC4P56524 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC4P56524 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms