Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIM2P55344 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.7■□□□□ 0.1
LIM2P55344 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIM2P55344 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIM2P55344 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LIM2P55344 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LIM2P55344 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LIM2P55344 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
LIM2P55344 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIM2P55344 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIM2P55344 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIM2P55344 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 FAM58CP-201ENST00000435741 640 ntBASIC15.69■□□□□ 0.1
LIM2P55344 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.69■□□□□ 0.1
LIM2P55344 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LIM2P55344 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.69■□□□□ 0.1
LIM2P55344 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.69■□□□□ 0.1
LIM2P55344 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.69■□□□□ 0.1
LIM2P55344 AL161645.1-201ENST00000622716 1255 ntBASIC15.69■□□□□ 0.1
LIM2P55344 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
LIM2P55344 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LIM2P55344 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
LIM2P55344 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIM2P55344 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIM2P55344 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIM2P55344 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.69■□□□□ 0.1
LIM2P55344 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.69■□□□□ 0.1
LIM2P55344 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIM2P55344 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LIM2P55344 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
LIM2P55344 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
LIM2P55344 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
LIM2P55344 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
LIM2P55344 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
LIM2P55344 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.68■□□□□ 0.1
LIM2P55344 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.68■□□□□ 0.1
LIM2P55344 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.68■□□□□ 0.1
LIM2P55344 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
LIM2P55344 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.68■□□□□ 0.1
LIM2P55344 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.68■□□□□ 0.1
LIM2P55344 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.68■□□□□ 0.1
LIM2P55344 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.68■□□□□ 0.1
LIM2P55344 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.68■□□□□ 0.1
LIM2P55344 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.68■□□□□ 0.1
LIM2P55344 AC099522.2-201ENST00000607001 744 ntBASIC15.68■□□□□ 0.1
LIM2P55344 AL078644.1-201ENST00000609881 752 ntBASIC15.68■□□□□ 0.1
LIM2P55344 C20orf181-201ENST00000623918 480 ntBASIC15.68■□□□□ 0.1
LIM2P55344 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.68■□□□□ 0.1
LIM2P55344 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
LIM2P55344 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LIM2P55344 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.68■□□□□ 0.1
LIM2P55344 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
LIM2P55344 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.68■□□□□ 0.1
LIM2P55344 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
LIM2P55344 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.68■□□□□ 0.1
LIM2P55344 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.68■□□□□ 0.1
LIM2P55344 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIM2P55344 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.67■□□□□ 0.1
LIM2P55344 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.67■□□□□ 0.1
LIM2P55344 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.67■□□□□ 0.1
LIM2P55344 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIM2P55344 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.67■□□□□ 0.1
LIM2P55344 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms