Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
MSH3P20585 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.49■□□□□ 0.23
MSH3P20585 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.48■□□□□ 0.23
MSH3P20585 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.48■□□□□ 0.23
MSH3P20585 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.48■□□□□ 0.23
MSH3P20585 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.48■□□□□ 0.23
MSH3P20585 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.48■□□□□ 0.23
MSH3P20585 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.48■□□□□ 0.23
MSH3P20585 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.48■□□□□ 0.23
MSH3P20585 FAM58CP-201ENST00000435741 640 ntBASIC16.48■□□□□ 0.23
MSH3P20585 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.48■□□□□ 0.23
MSH3P20585 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
MSH3P20585 AC109635.5-201ENST00000533593 962 ntBASIC16.48■□□□□ 0.23
MSH3P20585 MIR3687-2-201ENST00000577708 61 ntBASIC16.48■□□□□ 0.23
MSH3P20585 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.48■□□□□ 0.23
MSH3P20585 MIR3687-1-201ENST00000614492 61 ntBASIC16.48■□□□□ 0.23
MSH3P20585 AC091812.2-201ENST00000619081 385 ntBASIC16.48■□□□□ 0.23
MSH3P20585 AL161645.1-201ENST00000622716 1255 ntBASIC16.48■□□□□ 0.23
MSH3P20585 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
MSH3P20585 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.48■□□□□ 0.23
MSH3P20585 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.48■□□□□ 0.23
MSH3P20585 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.48■□□□□ 0.23
MSH3P20585 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
MSH3P20585 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.48■□□□□ 0.23
MSH3P20585 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
MSH3P20585 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
MSH3P20585 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.48■□□□□ 0.23
MSH3P20585 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
MSH3P20585 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.48■□□□□ 0.23
MSH3P20585 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 AL512652.2-201ENST00000625156 1716 ntBASIC16.48■□□□□ 0.23
MSH3P20585 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MSH3P20585 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
MSH3P20585 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.47■□□□□ 0.23
MSH3P20585 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.47■□□□□ 0.23
MSH3P20585 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
MSH3P20585 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
MSH3P20585 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
MSH3P20585 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.47■□□□□ 0.23
MSH3P20585 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
MSH3P20585 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.47■□□□□ 0.23
MSH3P20585 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.47■□□□□ 0.23
MSH3P20585 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.47■□□□□ 0.23
MSH3P20585 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.47■□□□□ 0.23
MSH3P20585 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.47■□□□□ 0.23
MSH3P20585 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.47■□□□□ 0.23
MSH3P20585 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.47■□□□□ 0.23
MSH3P20585 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 AL078644.1-201ENST00000609881 752 ntBASIC16.47■□□□□ 0.23
MSH3P20585 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.47■□□□□ 0.23
MSH3P20585 C20orf181-201ENST00000623918 480 ntBASIC16.47■□□□□ 0.23
MSH3P20585 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
MSH3P20585 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.47■□□□□ 0.23
MSH3P20585 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
MSH3P20585 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSH3P20585 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.46■□□□□ 0.23
MSH3P20585 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
MSH3P20585 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSH3P20585 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSH3P20585 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.46■□□□□ 0.23
MSH3P20585 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSH3P20585 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSH3P20585 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms