Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AL139011.1-202ENST00000642063 584 ntBASIC17.35■□□□□ 0.37
APOEP02649 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.35■□□□□ 0.37
APOEP02649 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
APOEP02649 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.35■□□□□ 0.37
APOEP02649 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.35■□□□□ 0.37
APOEP02649 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.35■□□□□ 0.37
APOEP02649 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
APOEP02649 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.35■□□□□ 0.37
APOEP02649 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
APOEP02649 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.35■□□□□ 0.37
APOEP02649 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.35■□□□□ 0.37
APOEP02649 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.35■□□□□ 0.37
APOEP02649 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
APOEP02649 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
APOEP02649 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
APOEP02649 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
APOEP02649 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
APOEP02649 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
APOEP02649 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
APOEP02649 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.34■□□□□ 0.37
APOEP02649 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.34■□□□□ 0.37
APOEP02649 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
APOEP02649 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
APOEP02649 ELL2P1-201ENST00000413990 1906 ntBASIC17.34■□□□□ 0.37
APOEP02649 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 CEND1P1-201ENST00000451006 455 ntBASIC17.34■□□□□ 0.37
APOEP02649 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.34■□□□□ 0.37
APOEP02649 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.34■□□□□ 0.37
APOEP02649 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.34■□□□□ 0.37
APOEP02649 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.34■□□□□ 0.37
APOEP02649 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.34■□□□□ 0.37
APOEP02649 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.34■□□□□ 0.37
APOEP02649 AC021097.1-201ENST00000607902 574 ntBASIC17.34■□□□□ 0.37
APOEP02649 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
APOEP02649 DOC2GP-204ENST00000639052 2548 ntBASIC17.34■□□□□ 0.37
APOEP02649 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
APOEP02649 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
APOEP02649 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
APOEP02649 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.33■□□□□ 0.37
APOEP02649 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
APOEP02649 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
APOEP02649 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
APOEP02649 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
APOEP02649 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
APOEP02649 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
APOEP02649 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.33■□□□□ 0.37
APOEP02649 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.33■□□□□ 0.37
APOEP02649 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.33■□□□□ 0.37
APOEP02649 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
APOEP02649 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
APOEP02649 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
APOEP02649 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.33■□□□□ 0.37
APOEP02649 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
APOEP02649 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
APOEP02649 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
APOEP02649 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
APOEP02649 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
APOEP02649 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
APOEP02649 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
APOEP02649 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
APOEP02649 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.33■□□□□ 0.36
APOEP02649 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
APOEP02649 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.33■□□□□ 0.36
APOEP02649 MIR4469-201ENST00000583919 79 ntBASIC17.33■□□□□ 0.36
APOEP02649 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.33■□□□□ 0.36
APOEP02649 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.33■□□□□ 0.36
APOEP02649 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.33■□□□□ 0.36
APOEP02649 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.33■□□□□ 0.36
APOEP02649 AC092902.6-201ENST00000641783 218 ntBASIC17.33■□□□□ 0.36
APOEP02649 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.33■□□□□ 0.36
APOEP02649 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
APOEP02649 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
APOEP02649 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms