Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.58■□□□□ 0.24
SHOX2O60902 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.58■□□□□ 0.24
SHOX2O60902 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.58■□□□□ 0.24
SHOX2O60902 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
SHOX2O60902 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.58■□□□□ 0.24
SHOX2O60902 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.58■□□□□ 0.24
SHOX2O60902 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.58■□□□□ 0.24
SHOX2O60902 AC090616.6-203ENST00000579186 1945 ntBASIC16.58■□□□□ 0.24
SHOX2O60902 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.58■□□□□ 0.24
SHOX2O60902 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 FER1L4-210ENST00000615531 5998 ntBASIC16.58■□□□□ 0.24
SHOX2O60902 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
SHOX2O60902 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
SHOX2O60902 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.57■□□□□ 0.24
SHOX2O60902 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.57■□□□□ 0.24
SHOX2O60902 AC008677.1-201ENST00000519230 1561 ntBASIC16.57■□□□□ 0.24
SHOX2O60902 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
SHOX2O60902 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.57■□□□□ 0.24
SHOX2O60902 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.57■□□□□ 0.24
SHOX2O60902 ECEL1P2-202ENST00000465689 757 ntBASIC16.57■□□□□ 0.24
SHOX2O60902 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.57■□□□□ 0.24
SHOX2O60902 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.57■□□□□ 0.24
SHOX2O60902 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.57■□□□□ 0.24
SHOX2O60902 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.57■□□□□ 0.24
SHOX2O60902 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.57■□□□□ 0.24
SHOX2O60902 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.57■□□□□ 0.24
SHOX2O60902 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC16.57■□□□□ 0.24
SHOX2O60902 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SHOX2O60902 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC16.57■□□□□ 0.24
SHOX2O60902 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.56■□□□□ 0.24
SHOX2O60902 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.56■□□□□ 0.24
SHOX2O60902 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.56■□□□□ 0.24
SHOX2O60902 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.56■□□□□ 0.24
SHOX2O60902 EGLN1P1-201ENST00000531623 762 ntBASIC16.56■□□□□ 0.24
SHOX2O60902 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.56■□□□□ 0.24
SHOX2O60902 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.56■□□□□ 0.24
SHOX2O60902 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.56■□□□□ 0.24
SHOX2O60902 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.56■□□□□ 0.24
SHOX2O60902 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC16.56■□□□□ 0.24
SHOX2O60902 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC16.56■□□□□ 0.24
SHOX2O60902 AC010947.1-201ENST00000623454 693 ntBASIC16.56■□□□□ 0.24
SHOX2O60902 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.56■□□□□ 0.24
SHOX2O60902 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.56■□□□□ 0.24
SHOX2O60902 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
SHOX2O60902 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
SHOX2O60902 FGD5P1-202ENST00000614866 2498 ntBASIC16.56■□□□□ 0.24
SHOX2O60902 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.56■□□□□ 0.24
SHOX2O60902 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SHOX2O60902 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SHOX2O60902 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms