Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LRCH3Q96II8 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LRCH3Q96II8 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LRCH3Q96II8 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.83■□□□□ 0.45
LRCH3Q96II8 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.83■□□□□ 0.45
LRCH3Q96II8 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LRCH3Q96II8 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRCH3Q96II8 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRCH3Q96II8 AC006033.1-201ENST00000440505 426 ntBASIC17.83■□□□□ 0.44
LRCH3Q96II8 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 HNRNPUP1-201ENST00000554987 333 ntBASIC17.83■□□□□ 0.44
LRCH3Q96II8 AC105129.2-201ENST00000559536 390 ntBASIC17.83■□□□□ 0.44
LRCH3Q96II8 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRCH3Q96II8 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
LRCH3Q96II8 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRCH3Q96II8 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRCH3Q96II8 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRCH3Q96II8 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRCH3Q96II8 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRCH3Q96II8 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRCH3Q96II8 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRCH3Q96II8 AC020916.1-201ENST00000587762 1774 ntBASIC17.82■□□□□ 0.44
LRCH3Q96II8 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRCH3Q96II8 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRCH3Q96II8 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 AC026740.1-201ENST00000607068 791 ntBASIC17.82■□□□□ 0.44
LRCH3Q96II8 LINC00896-202ENST00000609602 2128 ntBASIC17.82■□□□□ 0.44
LRCH3Q96II8 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 SLC22A20-204ENST00000530038 1673 ntBASIC17.82■□□□□ 0.44
LRCH3Q96II8 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRCH3Q96II8 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRCH3Q96II8 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRCH3Q96II8 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRCH3Q96II8 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
LRCH3Q96II8 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 RPL13AP20-201ENST00000459725 609 ntBASIC17.81■□□□□ 0.44
LRCH3Q96II8 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 AC091271.1-201ENST00000611877 1162 ntBASIC17.81■□□□□ 0.44
LRCH3Q96II8 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 AC009542.2-202ENST00000619004 1067 ntBASIC17.81■□□□□ 0.44
LRCH3Q96II8 AC128714.1-201ENST00000637035 887 ntBASIC17.81■□□□□ 0.44
LRCH3Q96II8 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.81■□□□□ 0.44
LRCH3Q96II8 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRCH3Q96II8 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms