Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 KRT18P34-201ENST00000488218 1270 ntBASIC16.16■□□□□ 0.18
VRK3Q8IV63 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.16■□□□□ 0.18
VRK3Q8IV63 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.16■□□□□ 0.18
VRK3Q8IV63 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 AL135744.1-201ENST00000565098 629 ntBASIC16.16■□□□□ 0.18
VRK3Q8IV63 AL138918.1-201ENST00000568306 659 ntBASIC16.16■□□□□ 0.18
VRK3Q8IV63 AC005829.1-201ENST00000570002 483 ntBASIC16.16■□□□□ 0.18
VRK3Q8IV63 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
VRK3Q8IV63 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.16■□□□□ 0.18
VRK3Q8IV63 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
VRK3Q8IV63 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.16■□□□□ 0.18
VRK3Q8IV63 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.16■□□□□ 0.18
VRK3Q8IV63 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.16■□□□□ 0.18
VRK3Q8IV63 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
VRK3Q8IV63 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 TFAMP1-201ENST00000412727 736 ntBASIC16.15■□□□□ 0.18
VRK3Q8IV63 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 MKNK2P1-201ENST00000437526 628 ntBASIC16.15■□□□□ 0.18
VRK3Q8IV63 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 DNAJB3-201ENST00000446806 729 ntBASIC16.15■□□□□ 0.18
VRK3Q8IV63 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 KRT8P48-201ENST00000515599 1220 ntBASIC16.15■□□□□ 0.18
VRK3Q8IV63 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 ELL2P1-201ENST00000413990 1906 ntBASIC16.15■□□□□ 0.18
VRK3Q8IV63 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.15■□□□□ 0.18
VRK3Q8IV63 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK3Q8IV63 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
VRK3Q8IV63 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
VRK3Q8IV63 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.18
VRK3Q8IV63 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 AC005622.1-201ENST00000636801 1703 ntBASIC16.14■□□□□ 0.17
VRK3Q8IV63 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 AC073439.1-201ENST00000624121 1774 ntBASIC16.14■□□□□ 0.17
VRK3Q8IV63 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK3Q8IV63 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK3Q8IV63 UPF3AP3-201ENST00000420996 769 ntBASIC16.14■□□□□ 0.17
VRK3Q8IV63 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms