Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 AC005052.1-201ENST00000625181 2492 ntBASIC19.97■□□□□ 0.79
VPS53Q5VIR6 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 GGT4P-201ENST00000623672 1708 ntBASIC19.97■□□□□ 0.79
VPS53Q5VIR6 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.97■□□□□ 0.79
VPS53Q5VIR6 AC092902.6-201ENST00000641783 218 ntBASIC19.97■□□□□ 0.79
VPS53Q5VIR6 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 ALOX12P2-203ENST00000570921 1945 ntBASIC19.97■□□□□ 0.79
VPS53Q5VIR6 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 CYP2T1P-202ENST00000641596 2535 ntBASIC19.97■□□□□ 0.79
VPS53Q5VIR6 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS53Q5VIR6 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 RPSAP43-201ENST00000402237 625 ntBASIC19.96■□□□□ 0.79
VPS53Q5VIR6 GPX1P2-201ENST00000429271 606 ntBASIC19.96■□□□□ 0.79
VPS53Q5VIR6 FAM58CP-201ENST00000435741 640 ntBASIC19.96■□□□□ 0.79
VPS53Q5VIR6 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 AC112482.1-201ENST00000492080 688 ntBASIC19.96■□□□□ 0.79
VPS53Q5VIR6 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 AC023511.2-201ENST00000618803 211 ntBASIC19.96■□□□□ 0.79
VPS53Q5VIR6 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.96■□□□□ 0.79
VPS53Q5VIR6 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.79
VPS53Q5VIR6 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS53Q5VIR6 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms