Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.76■□□□□ 0.43
VCPP55072 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.75■□□□□ 0.43
VCPP55072 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VCPP55072 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
VCPP55072 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
VCPP55072 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.75■□□□□ 0.43
VCPP55072 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VCPP55072 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.75■□□□□ 0.43
VCPP55072 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VCPP55072 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
VCPP55072 CRB3P1-201ENST00000449338 276 ntBASIC17.75■□□□□ 0.43
VCPP55072 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.75■□□□□ 0.43
VCPP55072 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
VCPP55072 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.75■□□□□ 0.43
VCPP55072 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
VCPP55072 CR383656.12-201ENST00000549567 513 ntBASIC17.75■□□□□ 0.43
VCPP55072 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.75■□□□□ 0.43
VCPP55072 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.75■□□□□ 0.43
VCPP55072 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
VCPP55072 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.75■□□□□ 0.43
VCPP55072 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.75■□□□□ 0.43
VCPP55072 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCPP55072 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 TUBB3P1-201ENST00000405796 1332 ntBASIC17.74■□□□□ 0.43
VCPP55072 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.74■□□□□ 0.43
VCPP55072 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.74■□□□□ 0.43
VCPP55072 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.74■□□□□ 0.43
VCPP55072 AC005237.2-201ENST00000434368 219 ntBASIC17.74■□□□□ 0.43
VCPP55072 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.74■□□□□ 0.43
VCPP55072 SLC25A39P2-201ENST00000537614 270 ntBASIC17.74■□□□□ 0.43
VCPP55072 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.74■□□□□ 0.43
VCPP55072 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.74■□□□□ 0.43
VCPP55072 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.74■□□□□ 0.43
VCPP55072 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
VCPP55072 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.74■□□□□ 0.43
VCPP55072 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.74■□□□□ 0.43
VCPP55072 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCPP55072 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCPP55072 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCPP55072 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.73■□□□□ 0.43
VCPP55072 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCPP55072 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.73■□□□□ 0.43
VCPP55072 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCPP55072 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCPP55072 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
VCPP55072 AL603756.1-201ENST00000606511 2163 ntBASIC17.73■□□□□ 0.43
VCPP55072 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VCPP55072 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.73■□□□□ 0.43
VCPP55072 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
VCPP55072 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VCPP55072 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
VCPP55072 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
VCPP55072 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.73■□□□□ 0.43
VCPP55072 KLF2P3-201ENST00000451977 1087 ntBASIC17.73■□□□□ 0.43
VCPP55072 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.73■□□□□ 0.43
VCPP55072 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.73■□□□□ 0.43
VCPP55072 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VCPP55072 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.73■□□□□ 0.43
VCPP55072 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.73■□□□□ 0.43
VCPP55072 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.73■□□□□ 0.43
VCPP55072 AL390754.1-201ENST00000619088 582 ntBASIC17.73■□□□□ 0.43
VCPP55072 FO538757.1-201ENST00000623083 1397 ntBASIC17.73■□□□□ 0.43
VCPP55072 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VCPP55072 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VCPP55072 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VCPP55072 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCPP55072 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCPP55072 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.72■□□□□ 0.43
VCPP55072 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.72■□□□□ 0.43
VCPP55072 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
VCPP55072 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCPP55072 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms