Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
COL18A1P39060 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
COL18A1P39060 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC21.43■■□□□ 1.02
COL18A1P39060 FTH1P14-201ENST00000482930 551 ntBASIC21.43■■□□□ 1.02
COL18A1P39060 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC21.43■■□□□ 1.02
COL18A1P39060 HNRNPA1P13-201ENST00000510646 963 ntBASIC21.43■■□□□ 1.02
COL18A1P39060 RNA5SP412-201ENST00000516234 123 ntBASIC21.43■■□□□ 1.02
COL18A1P39060 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC21.43■■□□□ 1.02
COL18A1P39060 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC21.43■■□□□ 1.02
COL18A1P39060 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL18A1P39060 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC21.43■■□□□ 1.02
COL18A1P39060 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL18A1P39060 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC21.43■■□□□ 1.02
COL18A1P39060 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL18A1P39060 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL18A1P39060 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL18A1P39060 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
COL18A1P39060 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL18A1P39060 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL18A1P39060 AC141586.5-201ENST00000624546 2050 ntBASIC21.43■■□□□ 1.02
COL18A1P39060 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
COL18A1P39060 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC21.43■■□□□ 1.02
COL18A1P39060 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL18A1P39060 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC21.43■■□□□ 1.02
COL18A1P39060 KRT8P22-201ENST00000562317 1415 ntBASIC21.43■■□□□ 1.02
COL18A1P39060 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL18A1P39060 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC21.43■■□□□ 1.02
COL18A1P39060 BCYRN1-201ENST00000418539 200 ntBASIC21.43■■□□□ 1.02
COL18A1P39060 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL18A1P39060 SLC25A47P1-201ENST00000531577 414 ntBASIC21.43■■□□□ 1.02
COL18A1P39060 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
COL18A1P39060 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC21.43■■□□□ 1.02
COL18A1P39060 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC21.43■■□□□ 1.02
COL18A1P39060 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL18A1P39060 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC21.43■■□□□ 1.02
COL18A1P39060 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC21.43■■□□□ 1.02
COL18A1P39060 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL18A1P39060 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC21.42■■□□□ 1.02
COL18A1P39060 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL18A1P39060 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
COL18A1P39060 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL18A1P39060 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC21.42■■□□□ 1.02
COL18A1P39060 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
COL18A1P39060 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC21.42■■□□□ 1.02
COL18A1P39060 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC21.42■■□□□ 1.02
COL18A1P39060 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL18A1P39060 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL18A1P39060 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL18A1P39060 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC21.42■■□□□ 1.02
COL18A1P39060 KRT43P-201ENST00000434019 910 ntBASIC21.42■■□□□ 1.02
COL18A1P39060 RPL7P3-201ENST00000441388 714 ntBASIC21.42■■□□□ 1.02
COL18A1P39060 NME4-207ENST00000450036 985 ntTSL 3 BASIC21.42■■□□□ 1.02
COL18A1P39060 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC21.42■■□□□ 1.02
COL18A1P39060 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC21.42■■□□□ 1.02
COL18A1P39060 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC21.42■■□□□ 1.02
COL18A1P39060 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
COL18A1P39060 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC21.42■■□□□ 1.02
COL18A1P39060 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC21.42■■□□□ 1.02
COL18A1P39060 GPR182-203ENST00000622922 591 ntBASIC21.42■■□□□ 1.02
COL18A1P39060 PFAS-212ENST00000625942 396 ntTSL 5 BASIC21.42■■□□□ 1.02
COL18A1P39060 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.42■■□□□ 1.02
COL18A1P39060 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
COL18A1P39060 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL18A1P39060 AC005622.1-201ENST00000636801 1703 ntBASIC21.42■■□□□ 1.02
COL18A1P39060 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL18A1P39060 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
COL18A1P39060 KRT8P37-201ENST00000451609 1420 ntBASIC21.41■■□□□ 1.02
COL18A1P39060 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL18A1P39060 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL18A1P39060 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL18A1P39060 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC21.41■■□□□ 1.02
COL18A1P39060 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC21.41■■□□□ 1.02
COL18A1P39060 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC21.41■■□□□ 1.02
COL18A1P39060 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC21.41■■□□□ 1.02
COL18A1P39060 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL18A1P39060 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL18A1P39060 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC21.41■■□□□ 1.02
COL18A1P39060 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC21.41■■□□□ 1.02
COL18A1P39060 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL18A1P39060 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC21.41■■□□□ 1.02
COL18A1P39060 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
COL18A1P39060 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL18A1P39060 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL18A1P39060 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
COL18A1P39060 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC21.41■■□□□ 1.02
COL18A1P39060 RPL28-203ENST00000428193 573 ntTSL 2 BASIC21.41■■□□□ 1.02
COL18A1P39060 ACTG1P3-201ENST00000431775 1114 ntBASIC21.41■■□□□ 1.02
COL18A1P39060 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
COL18A1P39060 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC21.41■■□□□ 1.02
COL18A1P39060 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC21.41■■□□□ 1.02
COL18A1P39060 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
COL18A1P39060 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC21.41■■□□□ 1.02
COL18A1P39060 RPL28-207ENST00000558815 616 ntTSL 2 BASIC21.41■■□□□ 1.02
COL18A1P39060 IGHV3OR16-16-201ENST00000563644 343 ntBASIC21.41■■□□□ 1.02
COL18A1P39060 AL049840.4-201ENST00000602422 811 ntBASIC21.41■■□□□ 1.02
COL18A1P39060 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC21.41■■□□□ 1.02
COL18A1P39060 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC21.41■■□□□ 1.02
COL18A1P39060 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL18A1P39060 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL18A1P39060 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms